[Bioc-devel] Reminder: BioC2024 Abstract Submission and Sticker Design Contest Deadlines Approaching

2024-03-14 Thread Maria . Doyle
Hi everyone, Just a friendly reminder about two important opportunities: BioC2024 Abstract Submission The deadline to submit abstracts for the North American Bioconductor Conference (BioC2024) is fast approaching! Don't miss your chance to present your work and contribute to the conference prog

Re: [Bioc-devel] xcms error with R CMD check "checking loading without being on the library search path"

2024-03-14 Thread Mike Smith
Hi Johannes, I think RCurl is imported via the package dependency chain of xcms -> SummarizedExperiment -> GenomeInfoDb -> RCurl. It looks like Hervé removed this dependency from GenomeInfoDb recently ( https://code.bioconductor.org/browse/GenomeInfoDb/commit/9562907f6800cf6052fff9fb2f85329ff4479

Re: [Bioc-devel] xcms error with R CMD check "checking loading without being on the library search path"

2024-03-14 Thread Rainer Johannes
Dear Mike, thanks for the excellent explanation - and yes, I think you're right (after some feedback also from Vince and Herve). I did re-save the objects bundled within xcms with a fresh installation and am now re-running a bunch of tests with different containers. thanks! jo Johannes Rainer