Re: [Bioc-devel] Moderately large files in an Experiment Data package?

Hi Lori, Thank you for the speedy and detailed reply. I will take a crack at the ExperimentHub option and resubmit. Cheers, Tim On Apr 8, 2024, at 8:34 AM, Kern, Lori wrote: Yes we would recommend using ExperimentHub. Which is a database with pointers to the data files; so files are only do

Re: [Bioc-devel] Important Bioconductor Release Deadlines

> Henrik, if Bioconductor releases weren’t tied to R releases, how could > Bioconductor test them? I guess like CRAN where as long as a package says it > depends on R >= 2.0 then you’re free to try installing on 2.0 even though the > combination has never been tested? Maybe I worry too much abou

Re: [Bioc-devel] Important Bioconductor Release Deadlines

> ... I'm on Mac OS 12.5. I've heard good things about 'rig' (The R Installation Manager; https://github.com/r-lib/rig). It can install multiple R versions in parallel on macOS, Windows, and Linux, without the different versions conflicting with each other. I recommend trying it out, because bein

Re: [Bioc-devel] Moderately large files in an Experiment Data package?

Yes we would recommend using ExperimentHub. Which is a database with pointers to the data files; so files are only downloaded when necessary to keep the package lightweight for end users. You have some options to where the data is stored. We encourage the use of zenodo or other well trusted d

Re: [Bioc-devel] plyranges maintainer update

We have updated the configurations on our end. Michael should push changes to the description to update the maintainer on the landing pages and to receive any notifications from us. Cheers, Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of B

[Bioc-devel] Moderately large files in an Experiment Data package?

Hello all, I have initiated the submission of three packages to Bioconductor: sceptre (an R package for perturb-seq analysis), ondisc (a companion R package to sceptre that implements new data structures for larg

[Bioc-devel] required force push to bioconductor

Dear all, Unfortunately, I caused problems on the devel branch of my ZygosityPredictor packages, which I could only solve by resetting to a previous commit. I now have to force push the changes to the bioconductor devel. Unfortunately, I can't do this myself, so I would like to ask if this cou