Re: [Bioc-devel] org.Hs.eg.db contains no GRPEL1 gene

2024-04-19 Thread James W. MacDonald
There were 18 genes missing, due to a filtering step that went awry. > select(org.Hs.eg.db, z, "SYMBOL") 'select()' returned 1:1 mapping between keys and columns ENTREZID SYMBOL 1 1665DHX15 2 6819 SULT1C2 3 8449DHX16 4 27233 SULT1C4 5

Re: [Bioc-devel] unix package in suggest leads to check error

2024-04-19 Thread Alexey Sergushichev
Hi Herve, We don't have tests for this part in the package tests (we have separate integration tests for that), but the full package functionality depends on bringing up an opencpu server, which uses the unix package to evaluate HTTP-requests within R environment. The servePhantasus function,

Re: [Bioc-devel] unix package in suggest leads to check error

2024-04-19 Thread Hervé Pagès
Hi Alex, On 4/19/24 09:53, Alexey Sergushichev wrote: > Hi, > > Our package "phantasus" requires the "unix" package to properly work on > *nix systems, I just tried to run 'R CMD check' on phantasus on my Linux laptop where I don't have the unix package installed, and everything went fine. In

[Bioc-devel] unix package in suggest leads to check error

2024-04-19 Thread Alexey Sergushichev
Hi, Our package "phantasus" requires the "unix" package to properly work on *nix systems, but works well without it on Windows and Mac OS (actually we depend on the opencpu package, which requires it). I've tried to put this package into suggest field, but now the package failed Bioc checks on