Re: [Bioc-devel] Deeptarget package

Dear Nguyen, I have a question related to the data that you use and I just bring it up here since I would also like to ask the bioconductor developers, how this can be handled properly. The depmap.org portal has a clear "Terms and Condition" statement that you need to agre

Re: [Bioc-devel] Deeptarget package

Thank You! Trinh From: Kern, Lori Date: Tuesday, June 11, 2024 at 12:19 PM To: bioc-devel@r-project.org , Nguyen, Trinh (NIH/NCI) [C] Subject: [EXTERNAL] Re: Deeptarget package Two things: 1. The package was accepted on Friday. Currently our software builds are only building twice a we

Re: [Bioc-devel] Deeptarget package

Two things: 1. The package was accepted on Friday. Currently our software builds are only building twice a week Tue and Fri. You can see the schedule of all the different builds at https://bioconductor.org/checkResults/. Eventually devel Bioc will go back to daily builds but there are som

[Bioc-devel] Deeptarget package

Dear Bioconductor team, Deeptarget package has been accepted. However, when I installed it has error of �package �DeepTarget� is not available for Bioconductor version '3.18'� Could you please give me some guidance? Thanks, Trinh [[alternative HTML version deleted]]

Re: [Bioc-devel] No bioc-git server access

Sorry for the inconvenience and the confusion. It looks like there was an error when your account was created. It has been remedied and you should now have a BiocCredentials account associated with the email. You will still have to activate your account to gain access. Let us know if there ar

[Bioc-devel] No bioc-git server access

Dear Bioconductor team, I am currently in the process of contributing a package to Bioconductor ( https://github.com/Bioconductor/Contributions/issues/3446). Today I wanted to implement the necessary changes for the pre-review check but I have trouble accessing the package on the bioc-git server.

Re: [Bioc-devel] Build fail due to "undefined color `fgcolor`"

This looks to be an issue introduced by changes in knitr 1.47.0, which lead to an incompatibility in the BiocStyle Rnw template. We're working on a patch to BiocStyle, which should be deployed on the build machines today, and will hopefully fix the issue in the affected packages. The is nothing pa