o force it
> to refresh the displayed stats with enough frequency, otherwise I would
> probably miss the pick. On merida1 I don't have to do anything because the
> 'top' command there automatically refreshes the displayed stats at very
> short intervals.
>
> H.
>
> O
-bit Windows but hopefully we won't need to do that.
>
> Hope this helps,
>
> H.
>
> On 4/6/19 04:10, Aaron Taudt wrote:
> > Dear bioconductor-devel,
> >
> > I am trying to fix an "Error: memory exhausted (limit reached?)" error
> that
n question is not particularly
memory-intensive.
Regards,
Aaron Taudt
[[alternative HTML version deleted]]
___
Bioc-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel
Dear all,
I am trying to register the native routines in my package as recommended by
BiocCheck. I have done this previously for a package using C++ code.
However, for this package I am using Rcpp and I cannot figure out how to
register my native routines.
My first problem is that I don't know
Hi,
I have a package which imports the two functions ggdendro::segment and
DNAcopy::segment. This leads to a warning message when checking the package:
Warning: replacing previous import ‘DNAcopy::segment’ by
‘ggdendro::segment’ when loading ‘AneuFinder’
How can I avoid this warning and
Dear all,
I am trying to update my experiment data package. I read the instructions
at
http://bioconductor.org/developers/how-to/source-control#experiment-data-packages
but it's not clear to me at all how to do it the right way. The package
infrastructure and data folders are stored in different
That did the trick! Thanks.
2016-04-15 17:28 GMT+02:00 Vincent Carey <st...@channing.harvard.edu>:
> other packages use
>
> #ifdef _OPENMP
>
> #include
>
> #endif
>
>
> have you tried that?
>
> On Fri, Apr 15, 2016 at 11:21 AM, Aaron Taudt <aaron.
Hi,
I am using openmp support in my C++ code and it builds just fine on Windows
and Linux. The morelia build output for OS X however yields the following
error:
In file included from ./R_interface.h:5:
./scalehmm.h:16:10: fatal error: 'libiomp/omp.h' file not found
#include // parallelization
Hi Peter,
GenomicAlignments::readGAlignmentPairs() can take a while to
(correctly) fail if the `which` parameter contains a "bad" seqlevel.
It'd be great if it failed early in the following scenario (just
experienced).
I had the same problem a while ago and solved it by first reading only the
Yes, I could reproduce the error with
CXXFLAGS = -O0
and fixed it with the suggestions in
http://stackoverflow.com/questions/11055802/static-and-extern-global-variables-in-c-and-c
by replacing extern with const.
registerRoutines(dll, CEntries, NULL, NULL, NULL);
R_useDynamicSymbols(dll, FALSE);
// R_forceSymbols(dll, TRUE);
}
}
Thanks!
I am not sure what causes the nan_detected problem and I cannot reproduce
it ... Any advice?
*Dipl. Biol. (t.o.) Aaron Taudt | PhD Student | University Medical Cente
I am trying to register my native routines as recommended by BiocCheck. I
followed the instructions in "Writing R Extensions" and have implemented
the following code in "init.cpp". However, the routines are still not
registered.
#include
#include
#include "R_interface.h" // contains
12 matches
Mail list logo
