Re: [Bioc-devel] Package size issue

2024-03-28 Thread Ali Sajid Imami
that that file is still part of the history. That should help you cut down on the size. Regards, Dr. Ali Sajid Imami LinkedIn <https://pk.linkedin.com/pub/ali-sajid-imami/50/956/2a6> On Thu, Mar 28, 2024 at 7:17 PM gabriel.villa...@mdc-berlin.de < gabriel.villa...@mdc-berlin.de>

[Bioc-devel] Project Application Reactivation request.

2024-02-08 Thread Ali Sajid Imami
and the Issue is here: https://github.com/Bioconductor/Contributions/issues/3151 Regards, Dr. Ali Sajid Imami LinkedIn <https://pk.linkedin.com/pub/ali-sajid-imami/50/956/2a6> Out of the night that covers me, Black as the pit from pole to pole, I thank whatever go

Re: [Bioc-devel] Package problems due to results() function from other package?

2023-10-31 Thread Ali Sajid Imami
Herve, I see the work you do and stand in awe. I can only wish I could some day be in a similar place. For now, I am content with submitting packages for 3.19. :) Regards, Dr. Ali Sajid Imami LinkedIn <https://pk.linkedin.com/pub/ali-sajid-imami/50/956/2a6> On Tue, Oct 31, 2023 at 4

Re: [Bioc-devel] KEGGREST is broken and has a long reverse-dependency chain.

2023-09-21 Thread Ali Sajid Imami
I'll take a look. I rely on KEGGREST a lot. Regards, Dr. Ali Sajid Imami LinkedIn <https://pk.linkedin.com/pub/ali-sajid-imami/50/956/2a6> On Thu, Sep 21, 2023 at 7:02 PM Charles Plessy wrote: > Dear all, > > yesterday I reported on GitHub that the regression tests of KEGGREST

Re: [Bioc-devel] Including large files for the package

2023-08-31 Thread Ali Sajid Imami
in iLINCS, including information about the cell lines, the time points and the dosages. From what I understand this is more likely to be suited for ExperimentHub since it's processed. Regards, Dr. Ali Sajid Imami LinkedIn <https://pk.linkedin.com/pub/ali-sajid-imami/50/956/2a6> On Thu, Aug 31

[Bioc-devel] Including large files for the package

2023-08-28 Thread Ali Sajid Imami
lightweight "pointer" packages. Similarly, I'm not entirely sure which Hub this would go to. Any advice or guidance will be appreciated. Regards, Dr. Ali Sajid Imami LinkedIn <https://pk.linkedin.com/pub/ali-sajid-imami/50/956/2a6> [[alternative HTML

Re: [Bioc-devel] Multiple projects for submission to Bioconductor

2023-01-02 Thread Ali Sajid Imami
at 8:12 PM Vincent Carey wrote: > > > On Mon, Jan 2, 2023 at 7:51 PM Ali Sajid Imami > wrote: > >> Hi Colleagues, >> >> I am currently a PhD student in Bioinformatics at the University of >> Toledo, >> College of Medicine and Life Sciences. I am worki

[Bioc-devel] Multiple projects for submission to Bioconductor

2023-01-02 Thread Ali Sajid Imami
set up to update from our github repo or is there a solution we can build to push our new "release" to the bioconductor git infra after the integration tests in github actions are completed? Thank you. Regards, Dr. Ali Sajid Imami LinkedIn <https://pk.linkedin.com/pub/ali-sajid-ima