Re: [Bioc-devel] Possible https://code.bioconductor.org SSL certificate issue

2024-03-06 Thread Anestis Gkanogiannis via Bioc-devel
This is a curl problem, nothing wrong with the SSL certificate of code.bioconductor.orgĀ  Try installing the ca-certificates package on your ubuntu. Best regards, Anestis Gkanogiannis, PhD - linkedin.com/in/anestis-gkanogiannis github.com/gkanogiannis www.gkanogiannis.com

Re: [Bioc-devel] Issue with a package dependent on rJava

2022-10-09 Thread Anestis Gkanogiannis via Bioc-devel
Hello, On line 1289 of melting.R you call the keyset() method of opts_melt (which is a HashMap). This method in Java until 11, return a private AbstractSet (KeySet). On line 1290 of melting.R you call iterator() method of the KeySet object you got on the previous line. Problem is that this

[Bioc-devel] Packages relying on rJava failing on merida1

2022-04-19 Thread Anestis Gkanogiannis via Bioc-devel
Hello Bioconductor core team, My package 'fastreeR' is marked with ERROR on merida1 on build/check report for BioC 3.15, although I haven't changed nor pushed an updated version, since package accepted. I then noticed the same error on merida1 with all packages (for example 'gaggle',