[Bioc-devel] Problems caused by earlier Rhtslib migration

Hi all, I am a co-maintainer of BitSeq. About a year ago, we were offered help in migration from Rsamtools to Rhtslib and we took the offer. The commit pushed by BioC team added a file src/bam_plbuf.c with just one line: #include This is now making our Windows build fail because of an infi

[Bioc-devel] Account activation problems

Dear Bioc-devel, I am the maintainer of 'tigre', and tried to activate my account for BiocCredentials. For some reason, the system claims that my email (antti.honk...@helsinki.fi) is not associated with any package, although it is specified in the DESCRIPTION. How can I activate my account?

Re: [Bioc-devel] NotNeeded in build report RSS feeds

Dan - Original Message - From: "lcollado" To: "Antti Honkela" Cc: "Dan Tenenbaum" , "bioc-devel" Sent: Wednesday, June 29, 2016 7:19:26 AM Subject: Re: [Bioc-devel] NotNeeded in build report RSS feeds Hi, I don't think this has anything

Re: [Bioc-devel] NotNeeded in build report RSS feeds

basic behavior of the RSS feeds is supposed to be to only notify you when there is a change in build status. So you should not get new feeds when the build status stays the same. Dan ----- Original Message - From: "Antti Honkela" To: "bioc-devel" Sent: Tuesday, June 28, 2

[Bioc-devel] NotNeeded in build report RSS feeds

Would it be possible to change the build report RSS feed generation to treat "NotNeeded" similarly as "OK"? This would make the feed more useful for spotting real problems. Thanks! Antti ___ Bioc-devel@r-project.org mailing list https://stat.ethz.c

[Bioc-devel] CfP: ICML 2015 Workshop on Machine Learning Open Source Software: Open Ecosystems

contributions at https://www.easychair.org/conferences/?conf=mloss2015 ORGANIZERS: Gaël Varoquaux (http://gael-varoquaux.info/) Antti Honkela (http://www.hiit.fi/u/ahonkela/) Cheng Soon Ong (http://www.ong-home.my/) ___ Bioc-devel@r-project.org mailing

[Bioc-devel] Problems creating Git-SVN bridge to an organisation repo

ause of #1, I did not get far enough to test if either of these would still work. Thanks a lot for the bridge, it is a great system (when it works :))! Antti -- Antti Honkela antti.honk...@hiit.fi - http://www.hiit.fi/u/ahonkela/ ___ Bioc-devel@r-

Re: [Bioc-devel] Unreproducible build check warning

ones. The method you wrote for scoreList dispataches on 'x' as a scoreList object but doesn't specify 'i' or 'j'. One of these indices must be present in order for subsetting to happen. In this case (I believe) the default is assuming 'i' as ANY and &#

[Bioc-devel] Unreproducible build check warning

irectly from Bioconductor runs cleanly. Can someone please help in figuring out what is going on? Antti -- Antti Honkela antti.honk...@hiit.fi - http://www.hiit.fi/u/ahonkela/ ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel

Re: [Bioc-devel] avoiding call to ".find.package"

-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel -- Antti Honkela antti.honk...@hiit.fi - http://www.hiit.fi/u/ahonkela/ ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel