[Bioc-devel] adding maintainers to SpatialExperiment repo

2021-03-23 Thread Dario Righelli
Hi Guys, we'd like to add Helena Crowell and Lukas Weber (CC) as maintainers of the SpatialExperiment repo so that they can push on the upstream. Thanks, Dario ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-deve

[Bioc-devel] SpatialExperiment checks fail on Windows platform

2022-12-13 Thread Dario Righelli
Hi everyone, we are having an issue when running GithubActions on Windows platform that we are not able to figure out. The error is about loading an image as a grob during the vignette construction. It seems that it loads the image path twice, but this sounds weird because the same vignette co

Re: [Bioc-devel] SpatialExperiment checks fail on Windows platform

2022-12-16 Thread Dario Righelli
gt; > Signatures: >     x > target  "StoredSpatialImage" > defined "StoredSpatialImage" > > ## (to see the tracing code, look at body(object)) > > I'm not sure I understand the logic for prefixing the already > normalized local path with "file://

[Bioc-devel] [R-pkg-devel] DESCRIPTION file building problem

2018-03-21 Thread Dario Righelli
Hi, I've a package with a DESCRIPTION file inside of it, as usual. It's a couple of times that, when I try to build the package on my local machine or on travis-ci, I get this error: Building package Building with: R CMD build 0.74s$ R CMD build . * checking for file ‘./DESCRIPTION’ ... OK * pr

[Bioc-devel] GenomeInfoDB SeqInfo function error

2018-09-13 Thread Dario Righelli
Hello everyone, I'm using in DEScan2 package the GenomeInfoDb::Seqinfo function with genome="mm10". And sometimes it appens to retrieve this error message "cannot open the connection to 'ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/635/GCF_01635.20_GRCm38/GCF_01635.20_GRCm38_asse