Hi,
I'm observing different results from executing BiocCheck, version 1.7.9 locally
and the build output.
The tar.gz output locally shows no Warnings and outputs this:
======================================
* Checking for support site registration...
* Maintainer is registered at support site!
The Single Package Builder, on the other hand, outputs this from the same
tar.gz:
======================================
* Checking for bioc-devel mailing list subscription...
* REQUIRED: Maintainer should subscribe to the bioc-devel mailing
list. Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
* Maintainer is registered at support site!
There doesn't seem to be a check on on the local version of BiocCheck that
matches the Single Package Builder version and thus, we're struggling to fix
this mailing list subscription warning. Also puzzling to us is that the
Maintainer has the same email attached to an older version of our package
(MMDiff).
Any help or guidance would be greatly appreciated.
Thanks,
David
> sessionInfo()
R Under development (unstable) (2016-03-28 r70390)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X 10.11.4 (El Capitan)
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] parallel stats4 stats graphics grDevices utils datasets
methods
[9] base
other attached packages:
[1] MMDiff2_0.99.6 BiocCheck_1.7.9 Biobase_2.31.3
[4] Rsamtools_1.23.6 Biostrings_2.39.12 XVector_0.11.7
[7] GenomicRanges_1.23.25 GenomeInfoDb_1.7.6 IRanges_2.5.40
[10] S4Vectors_0.9.44 BiocGenerics_0.17.3 httr_1.1.0
loaded via a namespace (and not attached):
[1] Rcpp_0.12.4 formatR_1.3
[3] plyr_1.8.3 BiocInstaller_1.21.4
[5] RColorBrewer_1.1-2 bitops_1.0-6
[7] tools_3.4.0 zlibbioc_1.17.1
[9] digest_0.6.9 jsonlite_0.9.19
[11] lattice_0.20-33 memoise_1.0.0
[13] gtable_0.2.0 BSgenome_1.39.4
[15] graph_1.49.1 shiny_0.13.2
[17] curl_0.9.6 stringr_1.0.0
[19] rtracklayer_1.31.9 knitr_1.12.3
[21] devtools_1.10.0 locfit_1.5-9.1
[23] grid_3.4.0 getopt_1.20.0
[25] optparse_1.3.2 R6_2.1.2
[27] XML_3.98-1.4 RBGL_1.47.0
[29] BiocParallel_1.5.21 magrittr_1.5
[31] ggplot2_2.1.0 htmltools_0.3.5
[33] scales_0.4.0 codetools_0.2-14
[35] biocViews_1.39.8 GenomicAlignments_1.7.20
[37] RUnit_0.4.31 SummarizedExperiment_1.1.22
[39] xtable_1.8-2 mime_0.4
[41] colorspace_1.2-6 httpuv_1.3.3
[43] stringi_1.0-1 RCurl_1.95-4.8
[45] munsell_0.4.3
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