Re: [Bioc-devel] Final list of deprecated package Release 3.18

2023-10-17 Thread Geistlinger, Ludwig
It seems we need to do something with regard to ReportingTools - this is a very popular and frequently used package. Anyone has a way to check in with some of the authors - seems that both Gabe Becker and Michael Lawrence are authors. I will also take a look what's going wrong. __

Re: [Bioc-devel] BiocChallenges: BioPlex protein-protein interactions & BugSigDB microbiome signatures

2021-08-04 Thread Geistlinger, Ludwig
quot;Lounge" area - details: https://kevinrue.github.io/BiocChallenges/articles/challenges/bugsigdb.html - participation / contribution: https://tinyurl.com/bugsigdb Thanks, Ludwig ________ From: Geistlinger, Ludwig Sent: Friday, July 30, 2021 4:16 AM To: bioc-devel@r-project.org

[Bioc-devel] BiocChallenges: BioPlex protein-protein interactions & BugSigDB microbiome signatures

2021-07-30 Thread Geistlinger, Ludwig
I'd like to announce two Bioc-community challenges: 1. BioPlex challenge (orga: Ludwig Geistlinger, Robert Gentleman): The BioPlex project (https://bioplex.hms.harvard.edu) project has created two proteome-scale, cell-line-specific protein-protein interaction (PPI) networks: the first in 293T cel

Re: [Bioc-devel] Git credentials

2021-07-15 Thread Geistlinger, Ludwig
Great, that worked. Many thanks! From: Nitesh Turaga Sent: Thursday, July 15, 2021 1:41 PM To: Geistlinger, Ludwig Cc: bioc-devel@r-project.org Subject: Re: [Bioc-devel] Git credentials Hi Ludwig, Could you please try to activate your account now? I�ve

[Bioc-devel] Git credentials

2021-07-15 Thread Geistlinger, Ludwig
Hi I am trying to update my Bioc git credentials. Under: https://git.bioconductor.org/BiocCredentials/account_activation/ I am trying to activate my account using the email ludwig_geistlin...@hms.harvard.edu that is listed as the email in the maintainer field of my Bioc packages (eg Enrichmen

Re: [Bioc-devel] Bioconductor package CNVRanger

2021-01-08 Thread Geistlinger, Ludwig
Great, many thanks for looking into this, Mike! Best, Ludwig From: Mike Smith Sent: Friday, January 8, 2021 3:48 AM To: Geistlinger, Ludwig Cc: bioc-devel@r-project.org Subject: Re: [Bioc-devel] Bioconductor package CNVRanger Hi Ludwig, I think this actually

Re: [Bioc-devel] Bioconductor package CNVRanger

2021-01-01 Thread Geistlinger, Ludwig
.21.1 [15] GenomeInfoDbData_1.2.4 From: Kern, Lori Sent: Wednesday, December 23, 2020 7:23 AM To: Geistlinger, Ludwig Subject: Bioconductor package CNVRanger Hello Package Maintainer, The Bioconductor Team would like to notify you that your package is currently faili