Re: [Bioc-devel] Help with setting up a build environment to match

2020-04-25 Thread Kieran O'Neill
package, it successfully runs all the examples in the vignette without error. ____ From: Fan, Jean Sent: April 24, 2020 12:51 PM To: Kieran O'Neill Cc: bioc-devel@r-project.org Subject: Re: [Bioc-devel] Help with setting up a build environment to match Hi Kieran,

Re: [Bioc-devel] Help with setting up a build environment to match

2020-04-25 Thread Kieran O'Neill
?Thanks Stephanie, that's also a very helpful suggestion! I hadn't thought of using Docker containers. From: Stephanie Gogarten Sent: April 24, 2020 4:34 PM To: Kieran O'Neill Cc: bioc-devel@r-project.org Subject: Re: [Bioc-devel] Help with set

Re: [Bioc-devel] Help with setting up a build environment to match

2020-04-25 Thread Kieran O'Neill
__ From: Andris Jankevics Sent: April 24, 2020 2:01 PM To: Kieran O'Neill Cc: bioc-devel@r-project.org Subject: Re: [Bioc-devel] Help with setting up a build environment to match Hi, Are you using R 4.00 on Ubuntu? Travis error indicates that you are using class(), output of this command

[Bioc-devel] Help with setting up a build environment to match

2020-04-24 Thread Kieran O'Neill
A package I maintain, contiBAIT, is failing to build on the BioC test servers. https://bioconductor.org/checkResults/3.11/bioc-LATEST/contiBAIT/malbec2-buildsrc.htmlv It's also failing on my Travis build set up on GitHub https://travis-ci.org/github/oneillkza/ContiBAIT/builds/674999114 But

Re: [Bioc-devel] Dependency on windowing systems in the flowCore package

2014-04-22 Thread Kieran O'Neill
lter" > > > > I'm suspecting that the method here is specific to > > curv1Filter,flowCore-class, whereas dispatch is looking for > > curv1Fitler,flowStats-class. > > > > Maybe a solution is in the fact that 'filter' actually

Re: [Bioc-devel] Dependency on windowing systems in the flowCore package

2014-04-10 Thread Kieran O'Neill
e (giving adequate citation and such, respecting licenses...). It >>> looks like the function doesn't depend too much on other functionality in >>> the feature package, so this shouldn't be too much of a problem. >>> >>> Thanks, >>> Kevin

Re: [Bioc-devel] Dependency on windowing systems in the flowCore package

2014-04-10 Thread Kieran O'Neill
On 10 April 2014 14:26, Dan Tenenbaum wrote: > Hi Kieran, > > > - Original Message - > > From: "Kieran O'Neill" > > To: bioc-devel@r-project.org > > Sent: Thursday, April 10, 2014 2:03:41 PM > > Subject: [Bioc-devel] Dependency on win

[Bioc-devel] Dependency on windowing systems in the flowCore package

2014-04-10 Thread Kieran O'Neill
In Bioconductor, the core infrastructure for loading and representing flow cytometry data is the flowCore package. It contains some very useful structures, most notably the flowFrame and flowSet classes, as well as read.FCS, which loads the (somewhat complicated, binary) FCS file format. However,