.
Cheers,
H.
On 21/03/2023 09:39, Luo Weijun wrote:
Thanks for the clarification. I have a analytics plot, which receives the
download stats from these pages and has not been updated for months. I thought
this is the cause, but could be something else. Anyway, thanks for working
, Hervé Pagès wrote:
Not for months, only since last week. They should be back in the next
12-18 hours. Thanks for reporting this.
Cheers,
H.
On 19/03/2023 11:00, Luo Weijun wrote:
> Dear BioC team,
> I noticed that download stats for BioC packages are not accessible for months:
> http
Dear BioC team,
I noticed that download stats for BioC packages are not accessible for months:
https://bioconductor.org/packages/stats/bioc/pathview/
https://bioconductor.org/packages/stats/bioc/BiocGenerics/
can you check on this? thanks.
Weijun Luo
Dear BioC team,
download stats for BioC packages don’t seem to be updated. The graphs were
generated on 03-09, but the stats are much lower than expected for 9 days:
https://bioconductor.org/packages/stats/bioc/SBGNview/
https://bioconductor.org/packages/stats/bioc/pathview/
Dear Nitesh and Bioc team,
We need to change the maintainer for SBGNview and SBGNview.data packages.
Xiaoxi Dong has left our team.
Please make Weijun Luo (luo_wei...@yahoo.com) and Kovidh Vegesna
(kvege...@uncc.edu) the maintainers. Thank you!
Weijun Luo
AM, Luo Weijun via Bioc-devel
> wrote:
>
> Thanks Xiaoxi, Dear BioC team:
> Some correction:
> My email associated with github is: luo_wei...@yahoo.com
> github username is: wluo1
> please let me know if there is any problem. Thank you.
> Weijun Luo
>
>
>
>
Thanks Xiaoxi, Dear BioC team:
Some correction:
My email associated with github is: luo_wei...@yahoo.com
github username is: wluo1
please let me know if there is any problem. Thank you.
Weijun Luo
On Thursday, July 11, 2019, 10:22:13 AM EDT, dong xiaoxi
wrote:
Dear Bioc members,
I
gt; Check out put for
>>
> “pathview” package. Please
also send the email to
>> Bioc-devel.
>>
>> Best,
>>
>> Nitesh
>>
>>
>>> On Sep 12, 2017,
> at 11:39
>> wrote:
>>>
>>> Nitesh,
&g
gt;>
>>> Nitesh,
>>> As I
>
mentioned previously, I
>> tried to
>> submit with the prefix ssh-rsa,
but
> it
>> always
complained
>> that “Github ID
cannot contain
>> spaces” since
there is a
>> space follow
ways complained
> that “Github ID cannot contain
> spaces” since there is a
> space following ssh-rsa. I guess it
> will allow me submit if
> I remove the empty space, but would
> that be a functional ssh
> key?
>> BTW, the
web form error“Github
> ID can
Dear BioC team,
Pathview is experiencing some build and parising problem. It turns out that
pathview imports some parsing functions from another package KEGGgraph, which
was not exported anymore in the KEGGgraph namespace (latest release 1.38.0).
Details in:
Hi Dan and Hervé,
Thank you for the special attention and quick action. I agree the the bioc
project need updates/additions all the time. Some stability or
back-compatibility as you guys did would make the project greater.
Weijun
On Fri, 5/13/16, Dan
Hervé,
Thanks for the update, it looks great!
Here is one problem though. I noticed that the original download stats link has
change too. For my pathview package, it was:
http://bioconductor.org/packages/stats/bioc/pathview.html
now changed to:
Dear BioC team,
I noticed some problem with keggLink() function of KEGGREST package, and it can
be traced back to KEGG REST API Linked entries. Some of this API function is
broken. For example, the following line used to get all gene-pathway mapping
for human, but retrieves nothing now.
Dear all,
I noticed that the classical bioc-help email was shut down completely, instead
we have to use the new bioc support forum. I feel that we can be a little more
cautious on this.
First, there should be tens of hundreds of subscribed users to the email list.
This is a extremely valuable
--
Thanks for the comments...
On 10/08/2014 12:15 PM, Luo Weijun wrote:
Dear all, I noticed that the classical bioc-help email
was shut down
completely, instead we have to use the new bioc support
forum. I feel that we
can be a little more cautious on this.
First, there should be tens
:
Subject: Re: [Bioc-devel] unexpected build and
check error
Dan Tenenbaum
dtene...@fhcrc.org
Cc: bioc-devel@r-project.org
Date: Saturday, April 5, 2014, 1:26 PM
On 04/04/2014 10:36 AM, Luo Weijun
wrote:
Dan,
Thanks for the followup. That’s wired. I
use R 3.0.0
here
Dan,
Thanks for the followup. That’s wired. I use R 3.0.0 here. It is different from
R-3.1.0, but I don’t think it would make such a difference in generating the
error below:
Error in bods[idx, id.type] : subscript out of bounds
I run the exact same build command on my local machine (as below),
My gage package imports a single function from pathview package. I just noticed
that to install gage from scratch, users need to install pathview and all its
dependencies, i.e. packages specified as both Imports and Depends in the
pathview DESCRIPTION file. In the meantime, when gage is loaded
I noticed that under R 3.0, I frequently get prompt to update other packages
after package installation like:
Using Bioconductor version 2.13 (BiocInstaller 1.12.0), R version 3.0.x.
Old packages: (long list of packages) …
…
…
Update all/some/none? [a/s/n]:
I am reluctant to update all my bioc
Dear all,
I just fixed some bugs in my pathview package. And would like to update my
release version (with Bioc 2.13) too. I checked out the release version, and
modified it. But I can’t commit the changes somehow. I did so for the 2.12
release version, it worked fine. Bellows is the error
Dan,
That works! Somehow, it always prompted me for username/passwd if needed in the
past,but not this time. Anyway, thanks!
Weijun
On Wed, 11/6/13, Dan Tenenbaum dtene...@fhcrc.org wrote:
Subject: Re: Commit problem in the release branch Re:
Hi all,
It seems that the original message I sent did not get through. Here is it again.
I noticed that the download statistics did not change at all in the past week.
The numbers stay the same or almost so for over one week. But the web page said
it is updated yesterday, like here
Dan,
You are welcome, I know it is hard to believe without seeing it. And thanks for
locating the problem and solving it!
Weijun
On Tue, 10/29/13, Dan Tenenbaum dtene...@fhcrc.org wrote:
Subject: Re: [Bioc-devel] Freezen download statistics for
Hello all:
I noticed that XML/RCurl packages have some problem on moscato1, the Windows
Server. This triggered a series of build and check error on packages on Windows
only, including my pathview package and its depends/imports, KEGGgraph,
KEGGREST, etc. actually so many packages have been
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