Re: [Bioc-devel] Problem with the MAC build machine

2017-10-24 Thread Matt Richards
On a similar note, I'm the maintainer of the trena package. I've been getting TIMEOUT on the Windows platform, but the build progresses on Linux and Mac. I'm hoping this doesn't adversely affect the package's inclusion in 3.6 On Tue, Oct 24, 2017 at 12:15 PM, mohammed Elsiddieg wrote: > Hi All >

Re: [Bioc-devel] Change push privileges on MotifDb

2017-09-25 Thread Matt Richards
Excellent, thank you Martin! On Sat, Sep 23, 2017 at 11:24 AM, Martin Morgan < martin.mor...@roswellpark.org> wrote: > On 09/22/2017 04:29 PM, Matt Richards wrote: > >> Hi all, >> >> I've been working with Paul Shannon to update the MotifDb package, of >

[Bioc-devel] Change push privileges on MotifDb

2017-09-22 Thread Matt Richards
Hi all, I've been working with Paul Shannon to update the MotifDb package, of which he is currently maintainer. Going forward, we have agreed that I should take over the responsibility of pushing package changes to the upstream branch. I assume this means we would need to switch the package maint

Re: [Bioc-devel] Package changes not merging with upstream

2017-08-25 Thread Matt Richards
Thanks Martin, I retried the push to upstream and it works just fine now. Thanks Matt On Fri, Aug 25, 2017 at 10:27 AM, Martin Morgan < martin.mor...@roswellpark.org> wrote: > On 08/25/2017 01:17 PM, Matt Richards wrote: > >> Hi all, >> >> I maintain the "t

[Bioc-devel] Package changes not merging with upstream

2017-08-25 Thread Matt Richards
Hi all, I maintain the "trena" package and I'm attempting to sync the changes from my in-house Github repo with the Bioconductor version. I submitted my ssh keys last week, so essentially I'm following these instructions: https://www.bioconductor.org/developers/how-to/git/sync- existing-repositor

Re: [Bioc-devel] Catching SVN up to Github

2017-07-31 Thread Matt Richards
; Buffalo, New York 14263 > -- > *From:* Bioc-devel on behalf of Matt > Richards > *Sent:* Thursday, July 27, 2017 4:36:47 PM > *To:* bioc-devel@r-project.org > *Subject:* [Bioc-devel] Catching SVN up to Github > > Hi all, > > Since our pac

[Bioc-devel] Catching SVN up to Github

2017-07-27 Thread Matt Richards
Hi all, Since our package, "trena", was accepted, we've made some pretty extensive changes to the package on Github. Our version has so far jumped from 0.99.10 to 0.99.135. These changes are all contained on a forked version of the Bioconductor mirror, as specified (https://www.bioconductor.org/ d