> the GitHub page. Michel, how do you prefer to get feedback?
>
> /Henrik
>
>
> On Thu, Jun 6, 2013 at 5:21 PM, Michael Lawrence
> wrote:
>> And here is the on-going development of the backend:
>> https://github.com/mllg/BiocParallel/tree/batchjobs
>>
>
Hi Florian,
Yes you're absolutely right. The fork currently depends on some
functions which are not yet included in the CRAN build. For now you
can get the latest development version on
http://batchjobs.googlecode.com. We'll upload a new version of
BatchJobs soon. I've documented this as an issue
You might want to consider using Recall() for recursion which should solve
this. Determining the required variables using heuristics as codetools will
probably lead to some confusion when using functions which include calls
to, e.g., with():
f = function() {
with(iris, Sepal.Length + Sepal.Width
We use a design iterator in BatchExperiments::makeDesign for a cartesian
product. I found a old version of designIterator (cf. <
https://github.com/tudo-r/BatchExperiments/blob/master/R/designs.R>) w/o
the optional data.frame input which is easier to read: <
https://gist.github.com/mllg/7469844>.
> - BatchJobs: is there support, or are there any plans to support the
> HTCondor infrastructure [1], and will this back-end be supported in
> BiocParallel?
We don't have access to a system running condor, otherwise we would
have implemented support already. I'd either need a temporary account
2014-09-23 23:41 GMT+02:00 Valerie Obenchain :
> Michel Lang (cc'd) implemented BatchJobs in BiocParallel. I'd like to get
> his opinion on how he wants to handle this type of error.
> Michel, let me know if you need more details, I can send another example
> off-li
This was a bug in BatchJobs::waitForJobs(). We now throw an error if
jobs "disappear" due to a faulty template file. I'd appreciate if you
could confirm that this is now correctly catched and handled on your
system. I furthermore suggest to replace NULL with NA_character_ in
.convertToSimpleError()
