Re: [Bioc-devel] TADCompare, permissions denied

2024-02-28 Thread Mikhail Dozmorov
sive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > ------ > *From:* Bioc-devel on behalf of > Mikhail Dozmorov > *Sent:* Wednesday, February 28, 2024 8:36 AM >

[Bioc-devel] TADCompare, permissions denied

2024-02-28 Thread Mikhail Dozmorov
I'm trying to push fixes for https://master.bioconductor.org/checkResults/3.19/bioc-LATEST/TADCompare/nebbiolo1-buildsrc.html. git remote -v biocg...@git.bioconductor.org:packages/TADCompare.git (fetch) biocg...@git.bioconductor.org:packages/TADCompare.git (push) E.g., for git fetch

Re: [Bioc-devel] CTCF annotation package's vignette not updating

2022-11-14 Thread Mikhail Dozmorov
> > I'm very sorry for the confusion and delay. > > > > Lori Shepherd - Kern > > Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York

Re: [Bioc-devel] CTCF annotation package's vignette not updating

2022-11-11 Thread Mikhail Dozmorov
nt of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > ------ > *From:* Bioc-devel on behalf of > Vincent Carey > *Sent:* Sunday, October 30, 2022 9:13 PM > *To:* Mikhail Dozmorov > *Cc:* bioc-devel > *Subject:*

[Bioc-devel] CTCF annotation package's vignette not updating

2022-10-30 Thread Mikhail Dozmorov
Hello, I'm trying to update documentation for the https://bioconductor.org/packages/devel/data/annotation/html/CTCF.html package so it can be shown in the 3.16 release. Pushed to bioc master twice, with version bump. But the build is not triggered

Re: [Bioc-devel] Maintainer change

2021-07-19 Thread Mikhail Dozmorov
Thank you, Nitesh, it worked. Best, Mikhail --- Mikhail Dozmorov, Ph.D. Department of Biostatistics, VCU On Mon, Jul 19, 2021 at 12:36 PM Nitesh Turaga wrote: > Hi Mikhail, > > You now have access to both packages. > > Please remove the previous maintainer in the DESCRIPTI

[Bioc-devel] Maintainer change

2021-07-18 Thread Mikhail Dozmorov
Please, add me, Mikhail Dozmorov, as a maintainer of the https://bioconductor.org/packages/preciseTAD/ and https://bioconductor.org/packages/preciseTADhub/ packages. The current maintainer cannot be reached. Thanks, Mikhail --- Mikhail Dozmorov, Ph.D. Department of Biostatistics, VCU

[Bioc-devel] CTCF AnnotationHub package

2021-05-10 Thread Mikhail Dozmorov
https://github.com/Bioconductor/Contributions/issues/2108. Please, advise what to do next and how to upload the data to AWS S3? Thanks, Mikhail --- Mikhail Dozmorov, Ph.D. Department of Biostatistics, VCU E-mail: mdozmo...@vcu.edu [[alternative HTML version deleted

[Bioc-devel] Maintainer for preciseTAD

2021-05-04 Thread Mikhail Dozmorov
. Thanks, Mikhail --- Mikhail Dozmorov, Ph.D. Department of Biostatistics, VCU E-mail: mdozmo...@vcu.edu Phone: 804-827-2055 [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo

Re: [Bioc-devel] Co-maintainer for SpectralTAD and TADCompare

2020-10-24 Thread Mikhail Dozmorov
for options. If we need to do anything immediately for the failing packages, please, let know. Thanks, Mikhail On Mon, Oct 19, 2020 at 11:06 PM Nitesh Turaga wrote: > Hi Mikhail, > > You should have access to your packages now. > > Best, > > Nitesh > > On Oct 19

[Bioc-devel] Co-maintainer for SpectralTAD and TADCompare

2020-10-19 Thread Mikhail Dozmorov
Hello, Would it be possible to add me as a co-maintainer to two packages? https://bioconductor.org/packages/SpectralTAD/ https://bioconductor.org/packages/TADCompare/ It'll be best if both Kellen, the current maintainer, and I will have push access. Thanks, Mikhail [[alternative HTML

Re: [Bioc-devel] non-conformable arrays

2020-08-09 Thread Mikhail Dozmorov
I see it now and didn't catch because ran md5sum on the same folder. Not sure how the two repositories diverged. Will synchronize back, that should solve the problem. Thank you. Mikhail On Sun, Aug 9, 2020 at 7:10 AM Vincent Carey wrote: > > > On Sun, Aug 9, 2020 at 6:57 AM Mikhail

Re: [Bioc-devel] non-conformable arrays

2020-08-09 Thread Mikhail Dozmorov
[1] stats graphics grDevices utils datasets methods base > > other attached packages: > [1] rcmdcheck_1.3.3 > > loaded via a namespace (and not attached): > [1] ps_1.3.3 fansi_0.4.1 prettyunits_1.1.1 withr_2.2.0 > > [5] digest_0.6.25 crayon_1.3.4 rp

[Bioc-devel] non-conformable arrays

2020-08-07 Thread Mikhail Dozmorov
t also works. I'm working with this package using bioconductor/bioconductor_docker:devel. But the strange behavior - vignette knits manually but fails in CMD check - persists both in Docker container and on local R installation. Please advise, where to troubleshoot next. Thanks, Mikhail --- Mikh