Dear BioC Team,
I am receiving a similar error from the MouseThymusAgeing package:
> smart.data <- MouseSMARTseqData(samples = "day1")
see ?MouseThymusAgeing and browseVignettes('MouseThymusAgeing') for
documentation
loading from cache
field not found in version - adding
see ?MouseThymusAgeing and browseVignettes('MouseThymusAgeing') for
documentation
loading from cache
Error: failed to load resource
name: EH4592
title: SMARTseq processed counts (day 1)
reason: unknown input format
Execution halted
Which is subsequently propagating through to errors in miloR on nebbiolo1 only
(Windows and Mac build servers are unaffected).
Quitting from lines 47-50 [unnamed-chunk-2] (milo_contrasts.Rmd)
Error: processing vignette 'milo_contrasts.Rmd' failed with diagnostics:
failed to load resource
name: EH4592
title: SMARTseq processed counts (day 1)
reason: unknown input format
Is this an issue with caching files?
Regards
Mike Morgan
Pronouns: He/Him
Lecturer
6.17, Institute of Medical Sciences
School of Medicine, Medical Sciences & Nutrition
University of Aberdeen
Foresterhill
Aberdeen
AB25 2ZD
Tel: 01224 437397
Web: https://www.abdn.ac.uk/ims/research/profiles/michael.morgan#research
From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Dolors Pelegr�
<dolors.pele...@isglobal.org>
Date: Wednesday, 12 June 2024 at 08:38
To: bioc-devel@r-project.org <bioc-devel@r-project.org>
Subject: [Bioc-devel] Error in methylclockData package
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Dear Bioconductor team,
I have seen that the methylclockData package gives an error when loading
the EH6082 resource, the error is:
get_TestDataset()
see ?methylclockData and browseVignettes('methylclockData') for
documentation
loading from cache
Warning in grepl("RD[ABX][2-9]\n", magic) :
unable to translate '<89>HDF
' to a wide string
Warning in grepl("RD[ABX][2-9]\n", magic) : input string 1 is invalid
Warning in grepl("RD[ABX][2-9]\r", magic) :
unable to translate '<89>HDF
' to a wide string
Warning in grepl("RD[ABX][2-9]\r", magic) : input string 1 is invalid
Warning in gsub("[\n\r]*", "", magic) :
unable to translate '<89>HDF
' to a wide string
Error: failed to load resource
name: EH6082
title: Test Dataset
reason: error in evaluating the argument 'x' in selecting a method for
function 'get': input string 1 is invalid
Execution halted
Full Bioconductor Checks:
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I don't know the reason or how I could solve it, I've searched the
distribution list and I haven't found any similar error. Could you please
give me some guidance to solve the error?
Best,
--
Dolors Pelegr� Sis�
Bioinformatics
*IS**Global*
Barcelona Institute for Global Health
Barcelona Biomedical Research Park (PRBB)
Doctor Aiguader 88
E-08003 Barcelona, Spain
Tel. +34 93 2147351
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