[Bioc-devel] Pushing an update to already released package

2021-07-29 Thread Oluwafemi OLUSOJI via Bioc-devel
Hello All, I just pushed an update to the upstream branch of a recently released package (cyanoFilter). I did not get any notification so I am not sure if this was the right thing to do. If not, what am I missing? Regards, Daniel [[alternative HTML version deleted]]

[Bioc-devel] Error building on Mac

2021-04-08 Thread Oluwafemi OLUSOJI via Bioc-devel
Dear All, I got this error in the latest build of my package. I think this has to do with Rgraphviz during the test on MacOS. Do I need to do anything about this? Regards, Daniel Quitting from lines 36-43 (cyanoFilter.Rmd) Error: processing vignette 'cyanoFilter.Rmd' failed with diagnostics: pac

[Bioc-devel] Error: Support site registration

2021-04-08 Thread Oluwafemi OLUSOJI via Bioc-devel
Dear All, I just committed some changes to my package, but I get this error about adding package name to watched tags on the support site. How do I fix this? Regards, Daniel * Checking for support site registration... Maintainer is registered at support site. * ERROR: Maintainer must add

Re: [Bioc-devel] Warnings on R CMD check on Mac OS and Linux

2021-03-11 Thread Oluwafemi OLUSOJI via Bioc-devel
e 'cyanoFilter' * removing 'C:/Users/pkgbuild/AppData/Local/Temp/RtmpYhB4xB/Rinst1ce0655031d2/cyanoFilter' --- ERROR: package installation failed Op do 11 mrt. 2021 om 15:54 schreef Oluwafemi OLUSOJI < oluwafemi.olus...@uhasselt.be

Re: [Bioc-devel] Warnings on R CMD check on Mac OS and Linux

2021-03-11 Thread Oluwafemi OLUSOJI via Bioc-devel
s symbol (via the export(PhytoFilter) directive in your > NAMESPACE file), you need to provide an alias for it in one of your man > pages. > > Hope this helps, > > H. > > > On 3/8/21 2:45 PM, Oluwafemi OLUSOJI via Bioc-devel wrote: > > Dear All, > > >

Re: [Bioc-devel] Warnings on R CMD check on Mac OS and Linux

2021-03-08 Thread Oluwafemi OLUSOJI via Bioc-devel
t; > On 3/8/21, 5:46 PM, "Bioc-devel on behalf of Oluwafemi OLUSOJI via > Bioc-devel" bioc-devel@r-project.org> wrote: > > Dear All, > > I get this warning on the latest update of my package. The warning > occurs > only with Mac and Linux. I am a bit

[Bioc-devel] Warnings on R CMD check on Mac OS and Linux

2021-03-08 Thread Oluwafemi OLUSOJI via Bioc-devel
Dear All, I get this warning on the latest update of my package. The warning occurs only with Mac and Linux. I am a bit at loss here. These errors don't actually exist because these functions and methods are properly documented. The missing link doesn't even exist anymore. I have rebuilt both the

Re: [Bioc-devel] Error on BiocCheckGitClone and Windows build

2021-03-02 Thread Oluwafemi OLUSOJI
ge further discussion on the issue itself for more specialized > assistance. > > Cheers, > > > Lori Shepherd > > Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Stree

Re: [Bioc-devel] Error on BiocCheckGitClone and Windows build

2021-03-02 Thread Oluwafemi OLUSOJI
ioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > -- > *From:* Bioc-devel on behalf of > Oluwafemi OLUSOJI > *Sent:* Monday, March 1, 2021 12:12 PM > *To:* bioc-devel@r-project.org > *Subject:* [Bioc-devel] Error on BiocChe

[Bioc-devel] Error on BiocCheckGitClone and Windows build

2021-03-01 Thread Oluwafemi OLUSOJI
Dear All, I recently submitted a package to Bioconductor and got this error message as part of the reply email. I am not sure what to do about it. The two files are git tracked, but they are also named in .Rbuildignore so I felt they should have been avoided. This is my first experience with Bio