>> annotations. For example AnnotationForge and AnnotationDbi are used to
>> create and query the hundreds of "classic" *db packages.
>>
>> Best,
>> H.
>>
>> On 10/20/19 19:56, Panagiotis Moulos wrote:
>> > Dear developers,
>> >
>
Hello,
Indeed there seems to be a global schema change regarding external_gene_id
to the latest versions of most Ensembl supported organisms which affected
also my package metaseqR. One solution is to change the host in the useMart
function (assuming the use of biomaRt to query Ensembl) to point t
- r[-length(r):-(length(r) - lag + 1L)] :
non-numeric argument to binary operator
while
cd <- CD[,1:2]
works. In the version released with Bioconductor 2.14, this was not
happening and the countData object could be accessed by sample names.
Thanks in advance for informing me whether
wait for vsn to be rebuilt? I would normally
> just wait quietly, but I am concerned because I think the creation of the
> BioC 3.4 release branch is today and release is tomorrow.
>
> Best and apologies for the noise if this issue is known,
>
>
> R.
>
>
>
--
*Pana
).
I suppose I have correctly followed the instructions here (
http://bioconductor.org/developers/how-to/git/maintain-github-bioc/) since
I didn't receive any errors/warnings and all seem ok in the repository.
Any suggestions are most welcome. Thanks in advance.
Panagiotis
--
*Panagiotis Mou
Thank you Martin! I had missed that part. Indeed maybe you can update the
instructions for non-git masters (like me).
On Fri, Aug 25, 2017 at 1:14 PM, Martin Morgan <
martin.mor...@roswellpark.org> wrote:
> On 08/25/2017 03:36 AM, Panagiotis Moulos wrote:
>
>> Dear all,
>&
nse, but more a meta-annotation package).
Do you have any thoughts or opinions on the best way of action?
Best regards,
Panagiotis
--
*Panagiotis Moulos, PhD*
*SNF researcher in Bioinformatics,*
*BSRC 'Alexander Fleming'*
*Fleming 34, 16672, Vari, Greece*
*Tel: +30 210 965631
