Re: [Bioc-devel] Vignette building fails

2016-01-28 Thread Paul Grosu
Hi Jean, I think you might need to update the required packages, so that they install if you don't have them installed. The test I usually run is by keeping clean R installations and testing packages fresh as if I am a user who just downloaded R. You seem to need org.Hs.eg.db and GO.db for the

Re: [Bioc-devel] Known Genes replaced by GENCODE genes at UCSC

2016-01-11 Thread Paul Grosu
Tim, you always crack me up! :) I totally agree, and it would probably be good to also have the tools enabled to download directly from Ensembl, NCBI, cloud-annotation source, etc. and build/update the AnnDbBimap objects. This way the annotation sources can maintain the data and us the scripts,