[Bioc-devel] git push access to MsCoreUtils repository

2020-06-24 Thread Sebastian Gibb via Bioc-devel
r you mis-spelled the reponame) fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. Could you please add me and Johannes to this repository as well? Kind regards, Sebastian

Re: [Bioc-devel] git permission denied to synapter repository

2018-01-17 Thread Sebastian Gibb
t, just a heads up, I’m adding Sebastian to the “synapter" package. > > Best, > > Nitesh > > > On Jan 17, 2018, at 4:07 PM, Sebastian Gibb wrote: > > > > Dear Bioconductor admins, > > > > I am the (co-)maintainer of the synapter package. > > &

[Bioc-devel] git permission denied to synapter repository

2018-01-17 Thread Sebastian Gibb
Dear Bioconductor admins, I am the (co-)maintainer of the synapter package. I tried to push some changes the first time after the conversion to git and got the following error: ``` > git push upstream master FATAL: W any packages/synapter s.gibb DENIED by fallthru (or you mis-spelled the reponam

Re: [Bioc-devel] EXTERNAL: Re: Git permission denied (publickey)

2017-10-10 Thread Sebastian Gibb
On 2017-10-10 22:48:43, martin.mor...@roswellpark.org wrote: > On 10/10/2017 04:43 PM, Sebastian Gibb wrote: > > Dear Biocondcutor admins, > > > > I am the maintainer of the cleaver package (and a co-maintainer of MSnbase, > > Pbase, synapter). As many other user me

Re: [Bioc-devel] Git permission denied (publickey)

2017-10-10 Thread Sebastian Gibb
Dear Biocondcutor admins, I am the maintainer of the cleaver package (and a co-maintainer of MSnbase, Pbase, synapter). As many other user mentioned here I got the same "permission denied (publickey)" error message. I already submit my mail address, svn username and github id via the google form.

Re: [Bioc-devel] names, mcols and metadata are not changed in "[<-" operator of class Vector

2014-05-07 Thread Sebastian Gibb
structure or its attributes. > People sometimes rely on this behavior to stuff the entire object with > a given value: > >x[] <- some_value > > They wouldn't expect this to destroy the names or metadata cols that > are on 'x'. > > Hope that makes sens

[Bioc-devel] names, mcols and metadata are not changed in "[<-" operator of class Vector

2014-05-07 Thread Sebastian Gibb
Dear all, today I observed an unexpected behaviour (at least for me) using the "[<-" operator on classes that inherited "Vector". I want to change the order of some elements inside the Vector (in my use case it is an AAStringSet object). If I use an index in "[<-" the names, the elementMetadata an

Re: [Bioc-devel] Gviz AnnotationTrack fails when "["-operator is defined

2014-05-05 Thread Sebastian Gibb
ist? > Florian > > On 04/05/14 13:48, "Sebastian Gibb" wrote: > > >Dear Florian, dear all, > > > >I want to use Gviz::AnnotationTrack to visualize my own class. This class > >overloads the "[" operator. It seems that just the definition of

[Bioc-devel] Gviz AnnotationTrack fails when "["-operator is defined

2014-05-04 Thread Sebastian Gibb
Dear Florian, dear all, I want to use Gviz::AnnotationTrack to visualize my own class. This class overloads the "[" operator. It seems that just the definition of my own "[" results in a method dispatching error: Error in callNextMethod(x, i) : bad object found as method (class “function”) Aft

[Bioc-devel] Gviz doesn't provide enough horizontial space

2014-05-02 Thread Sebastian Gibb
Dear Florian, dear all, thanks for the great Gviz package. I just recognized a problem with the calculation of the width of the plotting area for SequenceTrack. It seems that the last letter of a sequence is always missing (and sometimes also the first letter, depending on your screen size and th

[Bioc-devel] BiocStyle and knitr: option clash for package color

2013-07-22 Thread Sebastian Gibb
Dear BiocStyle-Maintainer, I try to use BiocStyle (0.0.13) in a knitr vignette. It seems both knitr and BiocStyle include the color package with different options (knitr: without any option; BiocStyle with usenames,dvipsnames). That's why "R CMD build" fails: ... * installing the package to re-b