[Bioc-devel] Failed to load resource from AnnotationHub

2024-06-24 Thread Shian Su via Bioc-devel
Hi BioC Developers, I have an error in the checks for my package Glimma that I hoped would go away on its own https://bioconductor.org/checkResults/release/bioc-LATEST/Glimma/nebbiolo1-checksrc.html Error: processing vignette 'single_cell_edger.Rmd' failed with diagnostics: failed to load

Re: [Bioc-devel] [EXTERN] Re: R package on Github uses Bioconductor depenencies and cant be installed.

2024-02-28 Thread Shian Su via Bioc-devel
I believe that devtools just uses remotes under the hood, so it should work. Shian On 29 Feb 2024, at 11:42, Ruff, Sergej wrote: Does it apply only to the remotes package or also to devtools::install_git function? Sergej Von: Shian Su Gesendet: Donnerstag,

Re: [Bioc-devel] [EXTERN] Re: R package on Github uses Bioconductor depenencies and cant be installed.

2024-02-28 Thread Shian Su via Bioc-devel
Sorry if this is spam, I think my last message got bounced because my mail client converted the GitHub link into a nice jpg. As you mentioned, you can just add biocViews: Software to your DESCRIPTION: https://github.com/r-lib/remotes/issues/477. If you need further explanation then the code is