[Bioc-devel] Not getting emails from watched tags

re getting added later? thanks, Stephanie Gogarten -- Stephanie M. Gogarten, PhD Senior Research Scientist / Genetic Analysis Center <https://www.biostat.washington.edu/research/centers/gac> Department of Biostatistics <https://www.biostat.washington.edu/> UNIVERSITY OF WASHINGTON

[Bioc-devel] RSS feeds not updating for some packages

Hi, One of my packages currently has an error in devel: https://bioconductor.org/checkResults/devel/bioc-LATEST/GWASTools/ However, the RSS feed does not show this error and was last updated in April 2022: http://bioconductor.org/rss/build/packages/GWASTools.rss I spot-checked a few other packag

[Bioc-devel] Warnings about man pages for assignment operators on Windows builds

Hi all, Several of my packages have a set of warnings on the Windows devel builds that have persisted for a while now, all of this form: Rd warning: cannot open file 'C:/Users/biocbuild/bbs-3.13-bioc/meat/SeqVarTools.buildbin-libdir/00LOCK-SeqVarTools/00new/SeqVarTools/help/lastFilter<-.html': In

Re: [Bioc-devel] Help with setting up a build environment to match

I have found the BIocnductor docker images very helpful in reproducing the build environment: https://www.bioconductor.org/help/docker/ I used a combination of the examples under "modifying the images" to get a version of the docker images that would build my vignettes, and also install all depend

Re: [Bioc-devel] missing package name tags on support site

; *From:* Bioc-devel on behalf of > Shepherd, Lori > *Sent:* Monday, January 6, 2020 12:46 PM > *To:* Stephanie Gogarten ; bioc-devel@r-project.org < > bioc-devel@r-project.org> > *Subject:* Re: [Bioc-devel] missing package name tags on support site > > Can you plea

[Bioc-devel] missing package name tags on support site

Hi developers, Is there any way to retroactively tag a post on the support site with a package name? Someone just alerted me to a question that I missed several months ago because the poster had not tagged it appropriately. I didn't see a way to add a tag in my answer, and it would be nice if this

[Bioc-devel] download statistics for 2019?

Dear Bioc Core team, Are package download statistics available for the current year? On the statistics page I only see previous years: http://bioconductor.org/packages/stats/bioc/GENESIS/ and the table does not exist: https://bioconductor.org/packages/stats/bioc/GENESIS/GENESIS_2019_stats.tab th

Re: [Bioc-devel] check error in SeqVarTools

gt; > > > Roswell Park Cancer Institute > > > > Department of Biostatistics & Bioinformatics > > > > Elm & Carlton Streets > > > > Buffalo, New York 14263 > > > > > > From: Bioc-devel on behalf o

[Bioc-devel] check error in SeqVarTools

Hi, I see that SeqVarTools has an error in check on malbec2, after passing checks for a week with no changes to the code. This is a result of a unit test which generates random numbers; once in a while a particular set of random numbers ends up generating a missing value in a calculation which cau

[Bioc-devel] GWASTools error on tokay related to VariantAnnotation::readVcf

Hi, I am puzzled by the current check failure of GWASTools on tokay (but not any other platform). I have a unit test that writes a VCF file, which is then read in using VariantAnnotation::readVcf. This is the header of the VCF file: ##fileformat=VCFv4.1 ##fileDate=2019-04-11 ##source=GWASTools: