Re: [Bioc-devel] 'memory not mapped' in trimLRpatterns

2015-05-08 Thread Michael Stadler
Hi Herve, Thanks a lot for the fix - it runs smoothly now on both release and devel. Cheers, Michael On 06.05.2015 10:57, Hervé Pagès wrote: > Hi Michael, > > I finally got to fix this in Biostrings 2.36.1 (release) and 2.37.2 > (devel). Both should become available via biocLite() on Friday aro

Re: [Bioc-devel] 'memory not mapped' in trimLRpatterns

2015-05-06 Thread Hervé Pagès
Hi Michael, I finally got to fix this in Biostrings 2.36.1 (release) and 2.37.2 (devel). Both should become available via biocLite() on Friday around 11am (Seattle time). Thanks for your patience. Cheers, H. On 04/30/2015 10:50 AM, Hervé Pagès wrote: Hi Michael, Thanks for the reminder. I mu

Re: [Bioc-devel] 'memory not mapped' in trimLRpatterns

2015-04-30 Thread Hervé Pagès
Hi Michael, Thanks for the reminder. I must confess this slipped out of my radar. I'll look into it today and will let you know. H. On 04/30/2015 08:42 AM, Michael Stadler wrote: Hi Herve, I stumbled again over the 'memory not mapped' issue in trimLRpatterns using updated versions of R and Bi

Re: [Bioc-devel] 'memory not mapped' in trimLRpatterns

2015-04-30 Thread Michael Stadler
Hi Herve, I stumbled again over the 'memory not mapped' issue in trimLRpatterns using updated versions of R and BioC-devel. I guess it does not hit people very often, but I would highly appreciate if it could be fixed. Many thanks, Michael PS: I can reproduce the issue using the code below under

Re: [Bioc-devel] 'memory not mapped' in trimLRpatterns

2014-04-25 Thread Hervé Pagès
Hi Michael, Thanks for the report. I'll look into this. H. On 04/22/2014 08:29 AM, Michael Stadler wrote: Dear Herve, We are hitting a 'memory not mapped' problem when using trimLRpatterns as detailed below. I did not manage to reproduce it with few sequences, so I have to refer to a publicly

[Bioc-devel] 'memory not mapped' in trimLRpatterns

2014-04-22 Thread Michael Stadler
Dear Herve, We are hitting a 'memory not mapped' problem when using trimLRpatterns as detailed below. I did not manage to reproduce it with few sequences, so I have to refer to a publicly available sequence file with many reads. Even then, it occasionally runs through without problems. Also, our