Hi Krithika, Regarding Step #10:
It is a good idea to have a release branch checkout in your GitHub (origin) repository in case you need to commit bug fixes to that branch: http://bioconductor.org/developers/how-to/git/bug-fix-in-release-and-devel/ <http://bioconductor.org/developers/how-to/git/bug-fix-in-release-and-devel/> Best, Marcel On 2/25/21 3:02 PM, Krithika Bhuvaneshwar wrote: > Thank you for catching that ! That was very helpful > > I have now completed Steps# 1 - 7 and Step # 9 from here: > *http://bioconductor.org/developers/how-to/git/sync-existing-repositories/ > <http://bioconductor.org/developers/how-to/git/sync-existing-repositories/> > *(I think Step # 8 does not apply to me) > > I don't exactly understand what Step # 10 is. Is this what I should do , or > can I skip this ? Please advise. > > > *10. Repeat for the release branch, replacing master with the name of the > release branch, e.g., RELEASE_3_6. It may be necessary to create the > release branch in the local repository.* > > git checkout RELEASE_13_3 > git merge upstream/RELEASE_13_3 > git merge origin/RELEASE_13_3 > git push upstream RELEASE_13_3 > git push origin RELEASE_13_3 > > > Thanks, > Krithika > > > > On Thu, Feb 25, 2021 at 12:33 PM Martin Morgan <mtmorgan.b...@gmail.com> > wrote: > >> The Bioconductor remote should not include 'ICBI, >> >> git remote remove upstream >> git remote add upstream g...@git.bioconductor.org:packages/CINdex.git >> >> On 2/25/21, 11:40 AM, "Bioc-devel on behalf of Krithika Bhuvaneshwar" < >> bioc-devel-boun...@r-project.org on behalf of kb...@georgetown.edu> wrote: >> >> Hello, >> >> We are the package maintaines for the CINdex package. We have made >> changes >> in our package to address the build errors for the upcoming release. >> The >> latest code is here in our Gtithub account * >> https://github.com/ICBI/CINdex >> <https://github.com/ICBI/CINdex> . *I'm trying to sync it with the >> BioC >> Github repo, but encountering errors. Would appreciate some help >> >> These are the steps I did: >> >> 1) Updated code so that there are no build errors. Updated version >> information in DESCRIPTION File (changed from 1.19.0 to 1.19.1). The >> latest >> code is here in our Gtithub account *https://github.com/ICBI/CINdex >> <https://github.com/ICBI/CINdex> * >> >> 2) I generated new ssh keys , and then added the ssh information from >> my >> *id_rsa.pub* file in this link. >> https://git.bioconductor.org/BiocCredentials/account_activation/ >> >> 3) I'm currently following the steps mentioned here: >> bioconductor.org/developers/how-to/git/sync-existing-repositories/. >> *I have >> an error when I try git fetch* >> >> #Configure the “remotes” of the GitHub clone. --- completed step >> git remote add upstream g...@git.bioconductor.org: >> packages/ICBI/CINdex.git >> >> $ git remote -v >> origin https://github.com/ICBI/CINdex (fetch) >> origin https://github.com/ICBI/CINdex (push) >> upstream g...@git.bioconductor.org:packages/ICBI/CINdex.git (fetch) >> upstream g...@git.bioconductor.org:packages/ICBI/CINdex.git (push) >> >> $ git fetch --all >> Fetching origin >> Fetching upstream >> FATAL: R any packages/ICBI/CINdex k.bhuvaneshwar DENIED by fallthru >> (or you mis-spelled the reponame) >> fatal: Could not read from remote repository. >> >> Please make sure you have the correct access rights >> and the repository exists. >> error: Could not fetch upstream >> >> Thanks, >> Krithika >> kb...@georgetown.edu >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel --- Marcel Ramos Bioconductor Core Team Roswell Park Comprehensive Cancer Center Dept. of Biostatistics & Bioinformatics Elm St. & Carlton St. Buffalo, New York 14263 This email message may contain legally privileged and/or...{{dropped:4}} _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel