Re: [Bioc-devel] Including a submodule in the main package repository

2018-06-18 Thread Turaga, Nitesh
Hi Tom, I agree with Kasper. It is far easier to maintain two repos and sync with your Bioconductor package as needed. We have no protocols in place or documentation in place to support submodules at the moment. I also want to add that your setup on GitHub is up to you as a maintainer and

Re: [Bioc-devel] Including a submodule in the main package repository

2018-06-14 Thread Kasper Daniel Hansen
My opinion: maintain two repos and pull/push between them. You would want the ability to have them out of sync anyway. Best, Kasper On Thu, Jun 14, 2018 at 1:16 AM, Thomas Sherman wrote: > Hi all, > > I'm a developer for the CoGAPS package (https://github.com/FertigLab/ > CoGAPS). I'm looking

[Bioc-devel] Including a submodule in the main package repository

2018-06-13 Thread Thomas Sherman
Hi all, I'm a developer for the CoGAPS package (https://github.com/FertigLab/CoGAPS). I'm looking into ways to build our core C++ code as a standalone application and I would like to be able to maintain a single repository for the C++ code and pull that into both repositories for the R package