Hi Shraddha,
I am also unable to reproduce this in RStudio Server Version 1.4.1106 using
our Bioc 3.12 Docker container.
There may be some inadvertent version mixing based on the error.
Please make sure the `BiocManager::valid()` is returning `TRUE`.
---
> brca <-
On Thu, Jun 3, 2021 at 9:11 AM Shraddha Pai
wrote:
> Hi Vincent,
> Thank you. This is for a workshop with pre-selected versions of R/BioC, so
> I have no control over the release.
> Will try redownloading the data. I just found it puzzling that the
> identical code works in command-line R (ie
Hi Vincent,
Thank you. This is for a workshop with pre-selected versions of R/BioC, so
I have no control over the release.
Will try redownloading the data. I just found it puzzling that the
identical code works in command-line R (ie started from bash shell) but not
in Rstudio but perhaps they have
You are behind the release and should update. However, with a reasonably
close
instance I can't reproduce your error. I had a flaky download at one
point; you might
want to reconstitute your brca data.
> brca = curatedTCGAData("BRCA", c("miRNASeqGene", "mRNAArray", "RPPAArray",
>
Hello BioC community,
Calling assays() on a SummarizedExperiment object has suddenly started
giving me this error in Rstudio but not on command-line R. I have been
trying to solve this for a few hours without luck and any help would be
great. sessionInfo() output below and this is Rstudio 1.4.