Let's keep the discussion on the mailing list.
On 12/07/2016 10:58 PM, Stian Lågstad wrote:
I tried doing that now and got another error: "cannot open the
connection". I don't know how to investigate that further.
Link to new build
report:
http://bioconductor.org/spb_reports/chimeraviz_buildrep
That's my thinking as well: That I should not need webshot. But I gave it a
*shot* anyway :) I'm thinking and hoping that there's an issue with
rmarkdown on oaxaca that can be solved.
On Thu, Dec 8, 2016 at 10:33 AM, Andrzej Oleś
wrote:
> Dear Stian,
> according to https://github.com/yihui/knitr
Dear Stian,
according to https://github.com/yihui/knitr/releases/tag/v1.14 the
dependency on webshot, which apparently is used to take website
screenshots, is optional and knitr should use fallback mode if webshot is
not available. Webshot has a list of system dependencies, not sure how hard
to ful
Not clear to me what's going on, I'm not a knitr/rmarkdown expert.
What I see is that knitr suggests webshot probably because it needs
it in some situations. That must be a rare situation though because
webshot is not installed on our build machines, which means that none
of the 1298 software pack
Thank you both. Could you also advice me on the error I'm receiving
on oaxaca? "there is no package called 'webshot'"
New build report: http://bioconductor.org/spb_reports/chimeraviz_
buildreport_20161207152203.html
On Wed, Dec 7, 2016 at 7:42 PM, Hervé Pagès wrote:
> Hi Stian,
>
> The build mac
Hi Stian,
The build machines used by the SPB are the same as the machines used
for the daily builds and they already have the latest BiocStyle
installed (BiocStyle 2.3.23). You can see this by going on the daily
build report for devel and clicking on any of the link in the
"Installed pkgs" column
Hi Stian,
Install BiocStyle 2.3.20 or newer and that error will go away. See
https://github.com/Bioconductor/BiocStyle/issues/20 for details.
Best,
Leo
On Wed, Dec 7, 2016 at 7:44 AM, Stian Lågstad wrote:
> Hi,
>
> Could someone please advice me on the errors I'm getting building my
> package?
Hi,
Could someone please advice me on the errors I'm getting building my
package? I'm unable to reproduce them locally.
Link to build report:
http://bioconductor.org/spb_reports/chimeraviz_buildreport_20161130173413.html
Link to bioconductor submission issue:
https://github.com/Bioconductor/Contr
