Re: [Bioc-devel] Best Practices for Renaming S4 Slots

2021-10-15 Thread Hervé Pagès
ge- From: Bioc-devel mailto:bioc-devel-boun...@r-project.org>> On Behalf Of Chris Eeles Sent: October 15, 2021 1:10 PM To: Hervé Pagès mailto:hpages.on.git...@gmail.com>>; bioc-devel@r-project.org <mailto:bioc-devel@r-project.org> Subject:

Re: [Bioc-devel] Best Practices for Renaming S4 Slots

2021-10-15 Thread Vincent Carey
ion is developer business > > Best, > > Chris > > > > *From:* Vincent Carey > *Sent:* October 15, 2021 1:31 PM > *To:* Chris Eeles > *Cc:* Hervé Pagès ; bioc-devel@r-project.org > *Subject:* Re: [Bioc-devel] Best Practices for Renaming S4 Slots > > > >

Re: [Bioc-devel] Best Practices for Renaming S4 Slots

2021-10-15 Thread Chris Eeles
les Cc: Herv� Pag�s ; bioc-devel@r-project.org Subject: Re: [Bioc-devel] Best Practices for Renaming S4 Slots I will defer to Herve about all details, but I would say that this level of change control is implied by the "no changes to package API without an interval of deprecation spanning at

Re: [Bioc-devel] Best Practices for Renaming S4 Slots

2021-10-15 Thread Hervé Pagès
is Eeles ; bioc-devel@r-project.org Subject: Re: [Bioc-devel] Best Practices for Renaming S4 Slots Hi Chris, There was some formatting issues with my previous answer so I'm sending it again. Hopefully this time the formatting is better. See below. On 14/10/2021 13:08, Chris Eeles wrote: Hell

Re: [Bioc-devel] Best Practices for Renaming S4 Slots

2021-10-15 Thread Vincent Carey
ehalf Of Chris > Eeles > Sent: October 15, 2021 1:10 PM > To: Hervé Pagès ; bioc-devel@r-project.org > Subject: Re: [Bioc-devel] Best Practices for Renaming S4 Slots > > Thanks Herve, > > I actually got the updateObject method working after sending this email, > but thanks

Re: [Bioc-devel] Best Practices for Renaming S4 Slots

2021-10-15 Thread Chris Eeles
; bioc-devel@r-project.org Subject: Re: [Bioc-devel] Best Practices for Renaming S4 Slots Thanks Herve, I actually got the updateObject method working after sending this email, but thanks for the information. Maybe it is worth adding a section on this topic to the Bioconductor developer section

Re: [Bioc-devel] Best Practices for Renaming S4 Slots

2021-10-15 Thread Hervé Pagès
d. Thanks, H. I plan to put in the work so that those using accessors shouldn't notice a difference. Best, Chris -Original Message- From: Hervé Pagès Sent: October 15, 2021 12:39 PM To: Chris Eeles ; bioc-devel@r-project.org Subject: Re: [Bioc-devel] Best Practices for Renami

Re: [Bioc-devel] Best Practices for Renaming S4 Slots

2021-10-15 Thread Chris Eeles
devel@r-project.org Subject: Re: [Bioc-devel] Best Practices for Renaming S4 Slots Hi Chris, There was some formatting issues with my previous answer so I'm sending it again. Hopefully this time the formatting is better. See below. On 14/10/2021 13:08, Chris Eeles wrote: > Hello B

Re: [Bioc-devel] Best Practices for Renaming S4 Slots

2021-10-15 Thread Hervé Pagès
Hi Chris, There was some formatting issues with my previous answer so I'm sending it again. Hopefully this time the formatting is better. See below. On 14/10/2021 13:08, Chris Eeles wrote: Hello BioC community, I am the lead developer for the CoreGx, PharmacoGx, RadioGx and ToxicoGx package

Re: [Bioc-devel] Best Practices for Renaming S4 Slots

2021-10-15 Thread Hervé Pagès
On 14/10/2021 13:08, Chris Eeles wrote: Hello BioC community, I am the lead developer for the CoreGx, PharmacoGx, RadioGx and ToxicoGx packages. We have recently been working on major updates to the structure of a CoreSet, which is inherited by the main class in all three of the other pack

[Bioc-devel] Best Practices for Renaming S4 Slots

2021-10-14 Thread Chris Eeles
Hello BioC community, I am the lead developer for the CoreGx, PharmacoGx, RadioGx and ToxicoGx packages. We have recently been working on major updates to the structure of a CoreSet, which is inherited by the main class in all three of the other packages listed. While making these changes, we