We do not manually replace Bioconductor packages for maintainers. Bioconductor packages are maintained in git and you will have to push up the changes.
Please see the following documentation: http://bioconductor.org/developers/how-to/git/ Feel free to comment back here with any further questions or if you have trouble connecting the the bioconductor git repository of your packages. Cheers, Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Jiping Wang <jzw...@northwestern.edu> Sent: Friday, May 24, 2019 8:51:22 AM To: bioc-devel@r-project.org Cc: Prof Brian Ripley; Liqun Xi Subject: [WARNING: UNSCANNABLE EXTRACTION FAILED]Re: [Bioc-devel] BioC packages NuPoP and nuCpos Hi, We have made minor revision of the NuPoP package such that the revised version does not pass character strings from R to Fortran. This revised package has been tested working properly. We would like to replace the NuPoP package at Bioconductor.org by the attached one. Please advise if anything else we should do or correct. Thanks for help. Sincerely, Jiping ------------------------------------------------------ Ji-Ping Wang, Ph.D. Professor Department of Statistics and Molecular BioSciences Northwestern University ------------------------------------------------------- On 5/22/19, 1:10 AM, "Prof Brian Ripley" <rip...@stats.ox.ac.uk> wrote: These now give in R-patched and R-devel (and BioC 3.9 and 3.10) NuPoP.Rcheck/NuPoP-Ex.Rout: passing a char vector to .Fortran is not portable nuCpos.Rcheck/nuCpos-Ex.Rout: passing a char vector to .Fortran is not portable This come from the NEWS item • The use of a character vector with .Fortran() is formally deprecated and gives a non-portability warning. (It has long been strongly discouraged in ‘Writing R Extensions’.) (It is even less portable than we had previously thought.) Please avoid it (and it is liable to be removed before too long): the preferred way to do that is to use .Call with a C wrapper calling the Fortran code. -- Brian D. Ripley, rip...@stats.ox.ac.uk Emeritus Professor of Applied Statistics, University of Oxford This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
