Re: [Bioc-devel] BiocManager for BioC 3.9/R 3.6

2019-05-07 Thread Miles Benton
Thanks Martin. For reproducibility we use containers, alongside a a RStudio Server Pro installation. This issue was occurring on my rolling release machines that I use for testing. One in particular (Siduction box) has been rolling since R 3.2, there are very rarely any issues. Best practise?

Re: [Bioc-devel] BiocManager for BioC 3.9/R 3.6

2019-05-07 Thread Martin Morgan
Yes, remove BIocVersion (all copies) I guess you have a library path, as shown by .libPaths() in R, that is shared between the two versions. This is generally BAD PRACTICE. because it means packages built for R-3.6 will be used by both of your R-3.5 and R-3.6 installations, and vice versa --

Re: [Bioc-devel] BiocManager for BioC 3.9/R 3.6

2019-05-07 Thread Miles Benton
I had the same issue today, here's the note I made on our work Teams channel: Not too sure where to deposit this little piece of information. Just a little 'hiccup' in the latest transition of R versions (3.5 -> 3.6) and Bioconductor. The newest stable version of Bioconductor (3.9) depends on R

[Bioc-devel] BiocManager for BioC 3.9/R 3.6

2019-05-07 Thread Felix Ernst
Hi, I just installed R 3.6, but everything I try to get a BiocManager Version, which works with R 3.6 were so far not successful. I installed BiocManager from CRAN � > install.packages("BiocManager") � and from GitHub � > devtools::install_github("Bioconductor/BiocManager") � but both times