Re: [Bioc-devel] BiocParallel: BatchJobs backend (Was: Re: BiocParallel)

2013-06-27 Thread Michel Lang
Hi Florian, Yes you're absolutely right. The fork currently depends on some functions which are not yet included in the CRAN build. For now you can get the latest development version on http://batchjobs.googlecode.com. We'll upload a new version of BatchJobs soon. I've documented this as an issue

Re: [Bioc-devel] BiocParallel: BatchJobs backend (Was: Re: BiocParallel)

2013-06-06 Thread Dan Tenenbaum
On Thu, Jun 6, 2013 at 1:56 PM, Henrik Bengtsson h...@biostat.ucsf.edu wrote: Hi, I'd like to pick up the discussion on a BatchJobs backend for BiocParallel where it was left back in Dec 2012 (Bioc-devel thread 'BiocParallel'

Re: [Bioc-devel] BiocParallel: BatchJobs backend (Was: Re: BiocParallel)

2013-06-06 Thread Michael Lawrence
And here is the on-going development of the backend: https://github.com/mllg/BiocParallel/tree/batchjobs Not sure how well it's been tested. Kudos to Michel Lang for making so much progress so quickly. Michael On Thu, Jun 6, 2013 at 1:59 PM, Dan Tenenbaum dtene...@fhcrc.org wrote: On Thu,