ary 19, 2018 4:10 PM
To: Ludwig Geistlinger; Gabe Becker; Vincent Carey
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] BiocParallel and AnnotationDbi: database disk image
is malformed
On 01/19/2018 02:24 PM, Ludwig Geistlinger wrote:
> I apologize if I haven't been specific enough - h
Public Health
From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Martin Morgan
<martin.mor...@roswellpark.org>
Sent: Friday, January 19, 2018 1:54 PM
To: Gabe Becker; Vincent Carey
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-
.@roswellpark.org>
Sent: Friday, January 19, 2018 1:54 PM
To: Gabe Becker; Vincent Carey
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] BiocParallel and AnnotationDbi: database disk image
is malformed
On 01/19/2018 12:37 PM, Gabe Becker wrote:
> IT seems like you could also force a copy
On 01/19/2018 12:23 PM, Vincent Carey wrote:
good question
some of the discussion on
http://sqlite.1065341.n5.nabble.com/Parallel-access-to-read-only-in-memory-database-td91814.html
seems relevant.
converting the relatively small annotation package content to pure R
read-only tables on the
IT seems like you could also force a copy of the reference object via
$copy() and then force a refresh of the conn slot by assigning a
new db connection into it.
I'm having trouble confirming that this would work, however, because I
actually can't reproduce the error. The naive way works for me
good question
some of the discussion on
http://sqlite.1065341.n5.nabble.com/Parallel-access-to-read-only-in-memory-database-td91814.html
seems relevant.
converting the relatively small annotation package content to pure R
read-only tables on the master before parallelizing
might be very
Hi,
Within a package I am developing, I would like to enable parallel probe to gene
mapping for a compendium of microarray datasets.
This accordingly makes use of annotation packages such as hgu133a.db, which in
turn connect to the SQLite database via AnnotationDbi.
When running in multi-core
