On 03/31/2017 05:29 AM, Sokratis Kariotis wrote:
Hey all,
Following your advice, the package now builds successfully! However, I
got this error while checking:
* checking package dependencies ... ERROR
Namespace dependency not required: ‘SummarizedExperiment’
Should I add /Imports ://Summarize
Hey all,
Following your advice, the package now builds successfully! However, I got
this error while checking:
* checking package dependencies ... ERROR
Namespace dependency not required: ‘SummarizedExperiment’
Should I add *Imports :**SummarizedExperiment* in my DESCRIPTION file?
Regards,
Sok
On 03/30/2017 05:21 AM, Sokratis Kariotis wrote:
Hey all,
Thanks for the input! I followed Marcel's advice and included the library
in my vignette. Also, I replaced lazyData with a datalist. The datalist
file includes "compressed_result : result" which is in turn loaded in the
vignette using "da
Hey all,
Thanks for the input! I followed Marcel's advice and included the library
in my vignette. Also, I replaced lazyData with a datalist. The datalist
file includes "compressed_result : result" which is in turn loaded in the
vignette using "data(compressed_result)". However, I got:
Warning in
Actually, I don't see where the package itself is loaded in the
vignette. If it were, this error would not occur.
Unsurprisingly, I get this when trying to run the vignette code:
Warning message:
In data(list = ds) : data set ‘pathprintSummarizedGEOData’ not found
I noticed that pathprintGEOData
Hi Sokratis,
You can resolve this issue by moving `SummarizedExperiment` to the
Suggests field and
including a `library(SummarizedExperiment)` call in your vignette.
Best regards,
Marcel
On Mon, Mar 27, 2017 at 11:09 AM Sokratis Kariotis
mailto:s.kario...@sheffield.ac.uk>> wrote:
Hey,
Hey,
I have submitted the package pathprintGEOData, which got accepted, but the
build/check report is now producing the following error:
*Error: processing vignette 'usingPathprintGEOData.Rnw' failed with
diagnostics: chunk 1 Error in assays(result) : could not find function
"assays"*
*assays
