Re: [Bioc-devel] Citation info still not displayed correctly for some packages

2016-08-30 Thread Ramon Diaz-Uriarte
Martin, thanks a lot and thanks too for the details and the workaround for packageDescription. best, R. On Tue, 30-08-2016, at 00:17, Martin Morgan wrote: > On 08/29/2016 05:40 PM, Ramon Diaz-Uriarte wrote: >> >> Dear All, >> >> At least for some packages >>

Re: [Bioc-devel] Citation info still not displayed correctly for some packages

2016-08-30 Thread Alexey Sergushichev
I see. > As a developer I would choose to write my CITATION file in a way that did not require the package to be installed. I agree. I would suggest then to include this into BiocCheck, so that a warning or at least a note could be generated, when citation is not working properly. -- Alexey On

Re: [Bioc-devel] Citation info still not displayed correctly for some packages

2016-08-30 Thread Martin Morgan
On 08/30/2016 06:56 AM, Alexey Sergushichev wrote: Martin, Won't it be easier to include actually installation for each package in the build script, but into a separate temp folder? Thus every package will be isntalled and citation() should work fine. installation is computationally costly

Re: [Bioc-devel] Citation info still not displayed correctly for some packages

2016-08-30 Thread Alexey Sergushichev
Martin, Won't it be easier to include actually installation for each package in the build script, but into a separate temp folder? Thus every package will be isntalled and citation() should work fine. Best, Alexey On Tue, Aug 30, 2016 at 1:17 AM, Martin Morgan < martin.mor...@roswellpark.org>

Re: [Bioc-devel] Citation info still not displayed correctly for some packages

2016-08-29 Thread Martin Morgan
On 08/29/2016 05:40 PM, Ramon Diaz-Uriarte wrote: Dear All, At least for some packages (http://bioconductor.org/packages/devel/bioc/html/OncoSimulR.html) the citation info is still not displayed correctly. I double checked installing from BioC just now, and the citation is not the one shown in

Re: [Bioc-devel] Citation info still not displayed correctly for some packages

2016-08-29 Thread Leonardo Collado Torres
Hi Ramon, I also noticed this earlier https://stat.ethz.ch/pipermail/bioc-devel/2016-August/009640.html and Martin said that they are working on fixing it. Best, Leo On Mon, Aug 29, 2016 at 5:40 PM, Ramon Diaz-Uriarte wrote: > > Dear All, > > At least for some packages >

[Bioc-devel] Citation info still not displayed correctly for some packages

2016-08-29 Thread Ramon Diaz-Uriarte
Dear All, At least for some packages (http://bioconductor.org/packages/devel/bioc/html/OncoSimulR.html) the citation info is still not displayed correctly. I double checked installing from BioC just now, and the citation is not the one shown in the landing page on BioC; the vignette