Re: [Bioc-devel] Error in .doLoadActions(where, attach) :

2014-02-20 Thread Martin Morgan
On 02/20/2014 03:44 PM, Jesper Gådin wrote: GenomicRanges was one version behind, but fixed that and now the biocValid() returns (excluding the sessionInfo) Quite challenging. In the end you can reproduce this with $ cd AllelicImbalance/data $ R --vanilla and then env = new.

Re: [Bioc-devel] Error in .doLoadActions(where, attach) :

2014-02-20 Thread Jesper Gådin
GenomicRanges was one version behind, but fixed that and now the biocValid() returns (excluding the sessionInfo) * Packages too new for Bioconductor version '2.14' Version LibPath AllelicImbalance "1.1.13" "/home/user/bin/R-devel/r-devel/library" downgrade with biocLite("Al

Re: [Bioc-devel] Error in .doLoadActions(where, attach) :

2014-02-20 Thread Martin Morgan
On 02/20/2014 03:05 PM, Jesper Gådin wrote: Hi all, Tried to R CMD build and check the AllelicImbalance package, but got a strange NOTE during R CMD check (see below). Have checked previous versions of AllelicImbalance to try to find when the NOTE/Error got introduced, but the R CMD check on the

[Bioc-devel] Error in .doLoadActions(where, attach) :

2014-02-20 Thread Jesper Gådin
Hi all, Tried to R CMD build and check the AllelicImbalance package, but got a strange NOTE during R CMD check (see below). Have checked previous versions of AllelicImbalance to try to find when the NOTE/Error got introduced, but the R CMD check on the old build files gives the same response. And