oc-devel@r-project.org
> Cc: Marini, Federico; Sonali Arora
> Subject: Re: [Bioc-devel] ExperimentHub::GSE62944 outdated
>
> Hi Ludwig and Federico,
>
> Yes, we plan to update these data in the next couple of weeks.
>
> Sonali mentioned that the current data only include the
, Valerie
Sent: Friday, June 3, 2016 5:28 PM
To: Ludwig Geistlinger; bioc-devel@r-project.org
Cc: Marini, Federico; Sonali Arora
Subject: Re: [Bioc-devel] ExperimentHub::GSE62944 outdated
Hi Ludwig and Federico,
Yes, we plan to update these data in the next couple of weeks.
Sonali mentioned that the
Hi Ludwig and Federico,
Yes, we plan to update these data in the next couple of weeks.
Sonali mentioned that the current data only include the tumor samples
and she'd like to add the normals. The new data will likely be added as
SummarizedExperiment objects instead of ExpressionSets.
Valerie
O
FYI
That works for me, but maybe this is also of interest for others, so I
wonder if somebody of the Bioc annotation/experiment team (Sonali,
Valerie, Martin?) could update this accordingly for ExperimentHub?
Best,
Ludwig
--
Dr. Ludwig Geistlinger
Lehr- und Forschungseinheit für Bioinformatik
Hi,
I would like to do some analysis on the TCGA data as provided in
ExperimentHub's GSE62944 ExpressionSet.
The Description of the dataset reads:
"TCGA re-processed RNA-Seq data from 9264 Tumor Samples and 741 normal
samples across 24 cancer types"
However, when loading the dataset via
> eh <
