Re: [Bioc-devel] False positive BiocCheck? Packages providing 5 object(s) used in this package should be imported in the NAMESPACE

2021-03-09 Thread stefano
-devel *Subject: *Re: [Bioc-devel] False positive BiocCheck? Packages providing 5 object(s) used in this package should be imported in the NAMESPACE It looks like you're assigning to assays, `assays(x) <- ...`, so you need to import `assays<-`, and not just `assays`. But this

Re: [Bioc-devel] False positive BiocCheck? Packages providing 5 object(s) used in this package should be imported in the NAMESPACE

2021-03-09 Thread Martin Morgan
It looks like you're assigning to assays, `assays(x) <- ...`, so you need to import `assays<-`, and not just `assays`. But this assays(new_obj)@listData <- looks VERY BAD. The internal structure of the assays slot (accessed with @) should NEVER be accessed directly; use the public 'API' on

[Bioc-devel] False positive BiocCheck? Packages providing 5 object(s) used in this package should be imported in the NAMESPACE

2021-03-09 Thread stefano
Hello, I have a trouble for tidySummarizedExperiment package BiocCheck() This is BiocCheck version 1.26.0. BiocCheck is a work in progress. Output and severity of issues may change. Installing package...* Checking Package Dependencies...* Checking if other packages can import this one... * ERROR: