[Bioc-devel] Gviz AnnotationTrack fails when "["-operator is defined

2014-05-04 Thread Sebastian Gibb
Dear Florian, dear all, I want to use Gviz::AnnotationTrack to visualize my own class. This class overloads the "[" operator. It seems that just the definition of my own "[" results in a method dispatching error: Error in callNextMethod(x, i) : bad object found as method (class “function”) Aft

Re: [Bioc-devel] Gviz AnnotationTrack fails when "["-operator is defined

2014-05-05 Thread Hahne, Florian
Hi Sebastian, Hm, this looks odd indeed. I am wondering whether this is some sort of name space problem. Does the same happen when you create your ³A² dummy class and the ³[³ method in a little dummy package with its own name space? Something seems to be messing up the methods table when you define

Re: [Bioc-devel] Gviz AnnotationTrack fails when "["-operator is defined

2014-05-05 Thread Sebastian Gibb
Dear Florian, On 2014-05-05 16:17:41, florian.ha...@novartis.com wrote: > Hm, this looks odd indeed. I am wondering whether this is some sort of > name space problem. Does the same happen when you create your ³A² dummy > class and the ³[³ method in a little dummy package with its own name > space?

Re: [Bioc-devel] Gviz AnnotationTrack fails when "["-operator is defined

2014-05-05 Thread Martin Morgan
On 05/05/2014 10:56 AM, Sebastian Gibb wrote: Dear Florian, On 2014-05-05 16:17:41, florian.ha...@novartis.com wrote: Hm, this looks odd indeed. I am wondering whether this is some sort of name space problem. Does the same happen when you create your ³A² dummy class and the ³[³ method in a litt

Re: [Bioc-devel] Gviz AnnotationTrack fails when "["-operator is defined

2014-05-06 Thread Hahne, Florian
Thanks Martin, Btw, is there some sort of disconnect on BioC Devel right now with regards to the latest package versions? Since the release there are some rather strict requirements in my DESCRIPTION file, but some of the packages versions are not available from BiocLite: [s_itoxadm@chbslx1501:~/R

Re: [Bioc-devel] Gviz AnnotationTrack fails when "["-operator is defined

2014-05-06 Thread Martin Morgan
On 05/06/2014 02:25 AM, Hahne, Florian wrote: > Thanks Martin, > Btw, is there some sort of disconnect on BioC Devel right now with regards > to the latest package versions? Since the release there are some rather > strict requirements in my DESCRIPTION file, but some of the packages > versions are