[Bioc-devel] Help with creating first Bioconductor package

Dear all, I am building my first Bioconductor package and, before wasting everyone's time with a faulty submission, I would like to clarify certain things. 1) The package seems to fulfill the requirements of the Bioconductor Package Guidelines and passes all checks except one "consideration": CO

Re: [Bioc-devel] Help with creating first Bioconductor package

Hi January, On Fri, Nov 14, 2014 at 11:52, January Weiner wrote: 2) Another problem I have is the testing package on other platforms. I do not have a Windows machine to test my package. Could someone help me and test my package (build, check and BiocCheck) on Windows and MacOS? Otherwise -- how d

Re: [Bioc-devel] Help with creating first Bioconductor package

feel free to put the code up on GitHub if you want comments prior to review (e.g. "vignette won't compile", "dependencies are screwed up", "S3 objects as far as the eye can see", etc.) Statistics is the grammar of science. Karl Pearson On Fr

Re: [Bioc-devel] Help with creating first Bioconductor package

- Original Message - > From: "January Weiner" > To: bioc-devel@r-project.org > Sent: Friday, November 14, 2014 2:51:11 AM > Subject: [Bioc-devel] Help with creating first Bioconductor package > > Dear all, > > I am building my first Biocon

Re: [Bioc-devel] Help with creating first Bioconductor package

Dear January, On 14 November 2014 10:51, January Weiner wrote: > Dear all, > > I am building my first Bioconductor package and, before wasting > everyone's time with a faulty submission, I would like to clarify > certain things. > > 1) The package seems to fulfill the requirements of the Biocond

Re: [Bioc-devel] Help with creating first Bioconductor package

On 11/14/14, 9:20 AM, Laurent Gatto wrote: Dear January, On 14 November 2014 10:51, January Weiner wrote: Dear all, I am building my first Bioconductor package and, before wasting everyone's time with a faulty submission, I would like to clarify certain things. 1) The package seems to ful

Re: [Bioc-devel] Help with creating first Bioconductor package

On 11/14/2014 02:51 AM, January Weiner wrote: Dear all, I am building my first Bioconductor package and, before wasting everyone's time with a faulty submission, I would like to clarify certain things. 1) The package seems to fulfill the requirements of the Bioconductor Package Guidelines and p

Re: [Bioc-devel] Help with creating first Bioconductor package

Dear all, thanks for your input, it was very helpful. I have some other specific questions, though: Martin > You'll want to develop your package on Bioc- and R-devel, as this > is the environment in which your package will be introduced to > the Bioc community. Specifically, I won't want to; I w

Re: [Bioc-devel] Help with creating first Bioconductor package

- Original Message - > From: "January Weiner" > Cc: "bioc-devel" > Sent: Friday, November 14, 2014 1:11:32 PM > Subject: Re: [Bioc-devel] Help with creating first Bioconductor package > > Dear all, > > thanks for your input, it wa

Re: [Bioc-devel] Help with creating first Bioconductor package

On 11/14/2014 01:11 PM, January Weiner wrote: Dear all, thanks for your input, it was very helpful. I have some other specific questions, though: Martin You'll want to develop your package on Bioc- and R-devel, as this is the environment in which your package will be introduced to the Bioc com

Re: [Bioc-devel] Help with creating first Bioconductor package

Dear Martin, thanks for your description, just a question > mkdir -p ~/src/R-devel > cd ~/src/R-devel > svn co https://svn.r-project.org/R/trunk > tools/rsync-recommended I think this should be trunk/tools/rsync-recommended > mkdir -p ~/bin/R-devel > cd ~/bin/R-devel > ~/src/R-devel/configure

Re: [Bioc-devel] Help with creating first Bioconductor package

On 11/15/2014 12:04 PM, January Weiner wrote: Dear Martin, thanks for your description, just a question mkdir -p ~/src/R-devel cd ~/src/R-devel svn co https://svn.r-project.org/R/trunk tools/rsync-recommended I think this should be trunk/tools/rsync-recommended mkdir -p ~/bin/R-devel cd