Re: [Bioc-devel] How can I maintain a stable list of source urls

2020-04-05 Thread Tim Sears
Thanks Mike. On your last question I don't have a ready example but I noticed several times that I had to update the sha256 hash but not the version number. Possible I'm mistaken, so if I notice it again I'll post in this thread. What is true for certain is that the nix R packages use source urls

Re: [Bioc-devel] How can I maintain a stable list of source urls

2020-04-03 Thread Mike Smith
I was talking with another nix user a while back about this problem, and I don't think there's a good solution at the moment. One thing that strikes me is that when release packages get updated the old versions get put in an archive and the source tarball remains available e.g. https://bioconducto

Re: [Bioc-devel] How can I maintain a stable list of source urls

2020-04-01 Thread Neumann, Steffen
Hi, this sounds very much like the bioconda approach, they have self-archived / mirrored the packages, which is not ideal. The Bio.tools people also ran into that issue earlier, and as mentioned in [1] is now fixed on the bioconductor side with stable download links. Yours, Steffen [1] ht

[Bioc-devel] How can I maintain a stable list of source urls

2020-03-31 Thread Tim Sears
Hi I am working to make bioconductor packages available through the nix package manager (https://nixos.org/). Currently nixpkgs points to a source url on one of the bioconductor mirrors. nixpkgs tracks the url and a sha256 hash of the unpacked source link. Unfortunately the links themselves often d