Re: [Bioc-devel] IRanges - PartitioningByEnd not found when package method runs.

2016-01-14 Thread Michael Lawrence
Thanks for the correction. I was starting to think my memory was deteriorating, because I couldn't remember fixing that ;) On Thu, Jan 14, 2016 at 3:43 PM, Hervé Pagès wrote: > On 01/13/2016 07:28 PM, Hervé Pagès wrote: >> >> Hi Ben, Martin, >> >> On 01/13/2016 08:19 AM, Morgan, Martin wrote: > >

Re: [Bioc-devel] IRanges - PartitioningByEnd not found when package method runs.

2016-01-14 Thread Hervé Pagès
On 01/13/2016 07:28 PM, Hervé Pagès wrote: Hi Ben, Martin, On 01/13/2016 08:19 AM, Morgan, Martin wrote: [...] So this is a bug in S4Vectors, but fixed in Bioc-devel where new package development should be occurring. I'll leave it to Herve or others to decide whether S4Vectors in release shou

Re: [Bioc-devel] IRanges - PartitioningByEnd not found when package method runs.

2016-01-14 Thread Morgan, Martin
in From: Ben Ward (TGAC) [ben.w...@tgac.ac.uk] Sent: Thursday, January 14, 2016 4:20 AM To: Hervé Pagès; Morgan, Martin; bioc-devel@r-project.org Subject: RE: [Bioc-devel] IRanges - PartitioningByEnd not found when package method runs. Hi, Herve, Martin,

Re: [Bioc-devel] IRanges - PartitioningByEnd not found when package method runs.

2016-01-14 Thread Ben Ward (TGAC)
org Subject: Re: [Bioc-devel] IRanges - PartitioningByEnd not found when package method runs. Hi Ben, Martin, On 01/13/2016 08:19 AM, Morgan, Martin wrote: > Hi Ben -- nice to see you over here ;) > > You're using the release version of R (R-3.2.3) and presumably release > ve

Re: [Bioc-devel] IRanges - PartitioningByEnd not found when package method runs.

2016-01-13 Thread Hervé Pagès
_________ From: Bioc-devel [bioc-devel-boun...@r-project.org] on behalf of Ben Ward (TGAC) [ben.w...@tgac.ac.uk] Sent: Wednesday, January 13, 2016 10:57 AM To: bioc-devel@r-project.org Subject: [Bioc-devel] IRanges - PartitioningByEnd not found when package method runs. Hi All, I am h

Re: [Bioc-devel] IRanges - PartitioningByEnd not found when package method runs.

2016-01-13 Thread Morgan, Martin
others to decide whether S4Vectors in release should be patched. Thanks for the bug report! Martin ____________ From: Bioc-devel [bioc-devel-boun...@r-project.org] on behalf of Ben Ward (TGAC) [ben.w...@tgac.ac.uk] Sent: Wednesday, January 13, 2016 10:57 AM To: bioc

[Bioc-devel] IRanges - PartitioningByEnd not found when package method runs.

2016-01-13 Thread Ben Ward (TGAC)
Hi All, I am having an issue with an un-exported method in a package I am developing, the package imports Biostrings and IRanges. I have created a minimal, reproducible example, (many many thanks to Martin Morgan for telling me how to do this) in this repo branch: https://github.com/Ward9250/t