There is an issue on the support site having to do with the inability to
import the summary function from the namespaces from the packages listed in
the subject line. I see the same problem/errors with my affycoretools
package.
When you load ReportingTools, you get the following warnings:
Warning
Hi Jim,
On 09/23/2014 09:42 AM, James W. MacDonald wrote:
There is an issue on the support site having to do with the inability to
import the summary function from the namespaces from the packages listed in
the subject line. I see the same problem/errors with my affycoretools
package.
When you
Hi Herve,
No joy:
> biocLite("ReportingTools")
BioC_mirror: http://bioconductor.org
Using Bioconductor version 2.14 (BiocInstaller 1.14.2), R version
3.1.0.
Installing package(s) 'ReportingTools'
trying URL '
http://bioconductor.org/packages/2.14/bioc/src/contrib/ReportingTools_2.4.0.tar.gz
'
Never mind. Installing all of GOstats, Category, AnnotationDbi and
ReportingTools fixed the issue.
Thanks,
Jim
On Tue, Sep 23, 2014 at 1:55 PM, James W. MacDonald wrote:
> Hi Herve,
>
> No joy:
>
>
> > biocLite("ReportingTools")
> BioC_mirror: http://bioconductor.org
> Using Bioconductor ver
Also note that, according to the sessionInfo() you sent, it seems you
were using the release. I've no idea how you could get these warnings
with the release since the changes I made recently to AnnotationDbi,
Category, and GOstats are in devel only...
H.
On 09/23/2014 11:05 AM, James W. MacDonal
Exactly! And re-installing the various packages didn't result in any
version changes, so it's a mystery as to why there was a problem in the
first place.
On Tue, Sep 23, 2014 at 2:24 PM, Hervé Pagès wrote:
> Also note that, according to the sessionInfo() you sent, it seems you
> were using the
