t CUNY SPH
Bioconductor Core Team
From: Bioc-devel
mailto:bioc-devel-boun...@r-project.org>
<mailto:bioc-devel-boun...@r-project.org>
<mailto:bioc-deve
ge contains more than one vignette like here,
>>>> keep in mind that 'R CMD build' evaluates them all in the same R session.
>>>> This "feature" can help a vignette succeed even if it's broken. For example
>>>> if ReactomeGSA got loade
other.
>>>
>>> Best,
>>>
>>> H.
>>>
>>>
>>> On 2/1/24 13:30, Johannes Griss wrote:
>>>
>>> Hi,
>>>
>>> Thanks a lot for the quick reply!
>>>
>>> Vignette is already fixed and committed.
>>
es,
>>
>> Looking at R CMD Check on devel, it looks like you're missing a
>> `library(ReactomeGSA)` in reanalysing-public-data.Rmd, which is why
>> it doesn't find the function `get_public_species()`. We only build
>> the vignettes on the Linux buil
ck
> channel #arm-linux. He's very active and responsive.
>
>
> I will take a look early next week!
>
> Martin
>
>
>
> Lastly, regarding the notification that happened on the 2024/01/08,
> it's possible that it failed due to an issue with another pac
mailto:bioc-devel-boun...@r-project.org>> on behalf of Johannes
> Griss <mailto:johannes.gr...@meduniwien.ac.at>>
> Sent: Thursday, February 1, 2024 3:18 PM
> To: bioc-devel@r-project.org <mailto:bioc-devel@r-project.org>
> mailto:bioc-devel@r-project.org>>
> Subj
>> that time which has since been resolved.
>>
>>
>> Jennifer Wokaty (they/them)
>>
>> Waldron Lab at CUNY SPH
>> Bioconductor Core Team
>>
>> From: Bioc-devel > <mailto:bioc-devel-bo
ioc-devel@r-project.org>>
Subject: [Bioc-devel] Incorrect warning about failing package built
* This email originates from a sender outside of CUNY. Verify the
sender before replying or clicking on links and attachments. *
Hello,
I just received a second warning the our
ince been resolved.
>
>
> Jennifer Wokaty (they/them)
>
> Waldron Lab at CUNY SPH
> Bioconductor Core Team
>
> From: Bioc-devel on behalf of Johannes
> Griss
> Sent: Thursday, February 1, 2024 3:18 PM
> To: bioc-devel@r-project.org
iss
Sent: Thursday, February 1, 2024 3:18 PM
To: bioc-devel@r-project.org
Subject: [Bioc-devel] Incorrect warning about failing package built
* This email originates from a sender outside of CUNY. Verify the sender before
replying or clicking on links and attachments. *
Hello,
I just recei
Hello,
I just received a second warning the our package ReactomeGSA is failing
in both release and devel on all platforms.
Quickly checking the respective reports shows that this is not the case:
https://bioconductor.org/checkResults/release/bioc-LATEST/ReactomeGSA/
https://bioconductor.org/c
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