Dear Martin, Lori,
I’ve added support for the column “tx_name” (which will return the transcript
ID) to all ensembldb methods so that’s fine now. Apparently I was just a little
late, since that is now in the devel version 1.5.1.
thanks, jo
> On 03 May 2016, at 18:51, Martin Morgan
On 05/02/2016 03:46 AM, Rainer Johannes wrote:
Hi Herve,
passing down additional arguments to the internal exonsBy, cdsBy,
fiveUTRsByTranscript and threeUTRsByTranscript would do it! That
would be great, thanks.
Hi Johannes --
Lori (cc'd, a new team member) and I are working on this.
The
Hi Herve,
passing down additional arguments to the internal exonsBy, cdsBy,
fiveUTRsByTranscript and threeUTRsByTranscript would do it! That would be
great, thanks.
cheers, jo
> On 02 May 2016, at 07:38, Hervé Pagès wrote:
>
> Hi Johannes,
>
> We can make
Hi Johannes,
We can make transcriptLengths() a generic but isn't the situation
similar to the extractTranscriptSeqs() situation that you brought
in January
(https://stat.ethz.ch/pipermail/bioc-devel/2016-January/008570.html) for
which adding the ellipsis to the argument list of the
function
Dear all,
I was wondering, you think it would be possible to make the transcriptLength
function in GenomicFeatures a method and export that? Reason is that I have
also implemented a transcriptLength function (actually presently a method in
order to allow that to be used for EnsDb and TxDb