Hi all,
I noticed that the seqinfo works on BamFile objects, but not on
BamFileList objects. For BamFileList, it does not throw an error, but
rather uses the inherited method for "List", which does not return a
useful result for BamFileList. I suggest the following implementation of
a useful
Hi Ryan --
I implemented your suggestion in Rsamtools 1.17.8; it's a little weird to come
up with such a synthetic Seqinfo, but I think the usual use case will be that
the bam files are actually identical with respect to their seqinfo. And it's
better than the previous behavior.
Thanks for t
I agree it could be a bit weird, but the merge method will catch any
inconsistency and throw an error, so I think it's fairly safe. And as you
say, the common case should be that the files all have the same seqinfo
anyway.
On Apr 25, 2014 10:32 PM, "Martin Morgan" wrote:
> Hi Ryan --
>
> I implem
