[Bioc-devel] New Package Submission Deadline today for Bioconductor 3.19

The final day to submit new packages to the Bioconductor contributions tracker to have a shot at being included in the upcoming 3.19 release is today Friday March 22nd. Please note: submission by this date does not guarantee it will be included - the package must undergo an official review and

[Bioc-devel] New Package Submission Deadline today for Bioconductor 3.18

The final day to submit new packages to the Bioconductor contributions tracker to have a shot at being included in the upcoming 3.18 release is today Friday September 29th. Please note: submission by this date does not guarantee it will be included - the package must undergo an official review

[Bioc-devel] New Package Submission Deadline this Friday for Bioconductor 3.17

The final day to submit new packages to the Bioconductor contributions tracker to have a shot at being included in the upcoming 3.17 release is this Friday March 31st. Please note: submission by this date does not guarantee it will be included - the package must undergo an official review and

[Bioc-devel] New Package Submission Deadline Tomorrow for Bioconductor 3.16

The final day to submit new packages to the Bioconductor contributions tracker to have a shot at being included in the upcoming 3.16 release is tomorrow Friday October 7th. Please note: submission by this date does not guarantee it will be included - the package must undergo an official review

[Bioc-devel] New Package Submission Deadline for Bioc Release 3.14

The final day to submit new packages to the Bioconductor contributions tracker to have a shot at being included in the upcoming 3.14 release is Friday October 1st. Please note: submission by this date does not guarantee it will be included - the package must undergo an official review and be a

[Bioc-devel] New Package Submission Deadline for Bioc Release 3.12

The final day to submit new packages to the Bioconductor contributions tracker to have a shot at being included in the upcoming 3.12 release is Friday October 2nd. Please note: submission by this date does not guarantee it will be included - the package must undergo an official review and be ac

Re: [Bioc-devel] New Package Submission Workflow Updates!

Hi Lluís -- We'll try to incorporate your comments. If you can, it would be great to make specific pull requests on https://github.com/Bioconductor/Contributions/blob/master/CONTRIBUTING.md or https://github.com/Bioconductor/bioconductor.org, e.g., at https://github.com/Bioconductor/bioconduct

Re: [Bioc-devel] New Package Submission Workflow Updates!

Hi Lori and Core Team, Hope this change will make it easier for all to submit packages to Bioconductor (and review them). I have a couple of comments on the documentation. I think that the extensive documentation available can be confusing and a bit circular. The README of github.com/Bioconductor

[Bioc-devel] New Package Submission Workflow Updates!

Hello Bioconductor Development Community, The team has made a significant change to the single package builder process for submitting new packages to Bioconductor. Previously, when submitting a new package, the process was to submit on github, add a webhook for interactive building on version b

Re: [Bioc-devel] New package submission : No reviewer communication.

rk 14263 From: Ralf Weber Sent: Wednesday, November 20, 2019 9:03 AM To: Shepherd, Lori Cc: Neumann, Steffen ; Turaga, Nitesh ; ashku...@gatech.edu ; bioc-devel@r-project.org Subject: Re: [Bioc-devel] New package submission : No reviewer communication. Dear Steffen and Lori,

Re: [Bioc-devel] New package submission : No reviewer communication.

effen > Sent: Wednesday, November 20, 2019 2:59 AM > To: Turaga, Nitesh ; ashku...@gatech.edu < > ashku...@gatech.edu>; bioc-devel@r-project.org > Subject: Re: [Bioc-devel] New package submission : No reviewer > communication. > > Hi, > > I think there is quite some b

Re: [Bioc-devel] New package submission : No reviewer communication.

; ashku...@gatech.edu ; bioc-devel@r-project.org Subject: Re: [Bioc-devel] New package submission : No reviewer communication. Hi, I think there is quite some backlog from September https://github.com/Bioconductor/Contributions/labels/1.%20awaiting%20moderation Maybe the BioC team can use the mom

Re: [Bioc-devel] New package submission : No reviewer communication.

t; From: Turaga, Nitesh > Sent: Tuesday, November 19, 2019 1:56 PM > To: Kumar, Ashwath ; > bioc-devel@r-project.org > Subject: Re: [Bioc-devel] New package submission : No reviewer > communication. > > Hi, > > Please be patient in this rega

Re: [Bioc-devel] New package submission : No reviewer communication.

r, Ashwath ; bioc-devel@r-project.org Subject: Re: [Bioc-devel] New package submission : No reviewer communication. Hi, Please be patient in this regard. The reviewer will get to your package as soon as they can. Each package takes time to review, and each reviewer is reviewin

Re: [Bioc-devel] New package submission : No reviewer communication.

Message- From: Turaga, Nitesh Sent: Tuesday, November 19, 2019 1:56 PM To: Kumar, Ashwath ; bioc-devel@r-project.org Subject: Re: [Bioc-devel] New package submission : No reviewer communication. Hi, Please be patient in this regard. The reviewer will get to your package as soon as they can

Re: [Bioc-devel] New package submission : No reviewer communication.

Hi, Please be patient in this regard. The reviewer will get to your package as soon as they can. Each package takes time to review, and each reviewer is reviewing multiple packages. As far as asking for support regarding your package, it is best to ask your questions on the "Issue" which was

[Bioc-devel] New package submission : No reviewer communication.

Hello all, I recently submitted a package to Bioconductor and I have not heard back from the reviewer about any feedback or acceptance or otherwise. The package has indeed passed all the automated tests and is awaiting the revision on the next stage of review process. Is there a recommended per

[Bioc-devel] New Package Submission Deadline for Bioc Release 3.10

The final day to submit new packages to the Bioconductor contributions tracker to have a shot at being included in the upcoming 3.10 release is Friday October 4th. Please note: submission by this date does not guarantee it will be included - the package must undergo an official review and be ac

Re: [Bioc-devel] New package submission failing only in devel due to dependent package errors

>> Department of Biostatistics & Bioinformatics >> >> Elm & Carlton Streets >> >> Buffalo, New York 14263 >> -- >> *From:* Bioc-devel on behalf of Daniel >> Cameron >> *Sent:* Tuesday, April 9, 2019 7:21:5

Re: [Bioc-devel] New package submission failing only in devel due to dependent package errors

el > Cameron > *Sent:* Tuesday, April 9, 2019 7:21:54 AM > *To:* bioc-devel@r-project.org > *Subject:* [Bioc-devel] New package submission failing only in devel due > to dependent package errors > > Hello, > > I am attempting to submit a new package, and everything buil

Re: [Bioc-devel] New package submission failing only in devel due to dependent package errors

Buffalo, New York 14263 From: Bioc-devel on behalf of Daniel Cameron Sent: Tuesday, April 9, 2019 7:21:54 AM To: bioc-devel@r-project.org Subject: [Bioc-devel] New package submission failing only in devel due to dependent package errors Hello, I am attem

[Bioc-devel] New package submission failing only in devel due to dependent package errors

Hello, I am attempting to submit a new package, and everything builds correctly against R 3.5 and release bioconductor, but the package build is failing in devel due to a dependent package. The build error is: Quitting from lines 52-56 (vignettes.Rmd) Error: processing vignette 'vignettes.Rmd' fa

[Bioc-devel] New Package Submission Deadline for Bioc Release 3.9

The final day to submit new packages to the Bioconductor contributions tracker to have a shot at being included in the upcoming 3.9 release is Friday April 5th. Please note: submission by this date does not guarantee it will be included - the package must undergo an official review and be accep

[Bioc-devel] New package submission tracker

Over the next few days we will be making more updates to the new package submission tracker. If you currently have a package in review or are planning to submit one, there may be intermittent periods of disruption/unavailability. We hope to keep this to a minimum. Thank you for your understa

[Bioc-devel] New Package Submission Deadline for Bioc Release 3.8

The final day to submit new packages to the Bioconductor contributions tracker to have a shot at being included in the upcoming 3.8 release is Friday October 5th. Please note: submission by this date does not guarantee it will be included - the package must undergo an official review and be acc

Re: [Bioc-devel] New package submission - how to add a webhook?

Oh lord, rookie mistakei was in the main settings instead of the repository settings haha Thank you Martin! On Fri, Aug 17, 2018 at 6:07 PM, Kenneth Condon wrote: > Hi all, > > I have just submitted a new package for inclusion in the next bioconductor > release. > > According to the instruc

Re: [Bioc-devel] New package submission - how to add a webhook?

See under Settings -> Webhooks rather than Settings -> Integrations & services, and the instructions at https://github.com/Bioconductor/Contributions/blob/master/CONTRIBUTING.md#adding-a-web-hook We use plain-old-webhooks, rather than GitHub Services. On 08/17/2018 01:07 PM, Kenneth Condon wr

[Bioc-devel] New package submission - how to add a webhook?

Hi all, I have just submitted a new package for inclusion in the next bioconductor release. According to the instructions , after adding a new issue I must now add a webhook. How do I add a webhook since

Re: [Bioc-devel] New Package Submission Tracker

& Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Hien To Sent: Tuesday, June 19, 2018 11:05:00 PM To: Shepherd, Lori; bioc-devel@r-project.org Subject: Re: [Bioc-devel] New Package Submission Tracker Hi I've submitted a new pa

Re: [Bioc-devel] New Package Submission Tracker

__ From: Bioc-devel on behalf of Shepherd, Lori Sent: Thursday, 14 June 2018 10:17:56 PM To: bioc-devel@r-project.org Subject: [Bioc-devel] New Package Submission Tracker The Single Package Builder for new package submissions is experience some intermittent connectivity issues. We are

[Bioc-devel] New Package Submission Tracker

The Single Package Builder for new package submissions is experience some intermittent connectivity issues. We are working on the issue and hope to have it resolved soon. Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & C

Re: [Bioc-devel] New package submission

Hi Divy -- Please don't be shy about providing specifics, like the package name or issue! The additional information is posted as a comment on your contribution issue ('by email' is no longer inaccurate, it'll be updated). https://github.com/Bioconductor/Contributions/issues/592 https://

[Bioc-devel] New package submission

Hi, The package I submitted was accepted about a week ago and the message from the *bioc-issue-bot* in github said that I will receive additional information via email. I haven't received any email yet. So I am wondering when I will receive it and how to proceed. Thank you, Divy [[alt

[Bioc-devel] New Package Submission with external tool dependency

___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel

Re: [Bioc-devel] new package submission (pcxn) Abnormal build result

Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > -- > *From:* Bioc-devel on behalf of > Sokratis Kariotis > *Sent:* Monday, October 2, 2017 8:07:12 AM > *To:* Bioc-devel@r-project.org > *S

Re: [Bioc-devel] new package submission (pcxn) Abnormal build result

Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel on behalf of Sokratis Kariotis Sent: Monday, October 2, 2017 8:07:12 AM To: Bioc-devel@r-project.org Subject: [Bioc-devel] new package submission (pcxn) Abnorm

[Bioc-devel] new package submission (pcxn) Abnormal build result

Hi all, Today I submitted a new package called "pcxn" in bioconductor and I got the following Abnormal built result: Warning in fun(libname, pkgname) : no display name and no $DISPLAY environment variable Error: processing vignette 'usingPCxNdb.Rnw' failed with diagnostics: chunk 4 (label = p

[Bioc-devel] new package submission deadline for Bioconductor 3.5

Hello, The new package submission deadline is March 31. This deadline will serve as the potential to be included in release 3.5 pending review; packages after this deadline will remain in Bioconductor devel pending proper review. Thank you. Lori Shepherd Bioconductor Core Team Roswell Park

Re: [Bioc-devel] New Package submission request to Bioconductor Project

stics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > -- > *From:* Bioc-devel on behalf of Jurat > Shayidin > *Sent:* Tuesday, December 20, 2016 6:35:52 AM > *To:* bioc-devel@r-project.org > *Subject:* [B

Re: [Bioc-devel] New Package submission request to Bioconductor Project

ember 20, 2016 6:35:52 AM To: bioc-devel@r-project.org Subject: [Bioc-devel] New Package submission request to Bioconductor Project Dear BiocDevel, Bioconductor Team : I've read Bioconductor contribution repository, and new package submission with full instruction, and make sure I am ready

[Bioc-devel] New Package submission request to Bioconductor Project

Dear BiocDevel, Bioconductor Team : I've read Bioconductor contribution repository, and new package submission with full instruction, and make sure I am ready to submit my packages -- MSPC -- to Bioconductor projects. However, my package both succeed with R CMD check, R CMD BiocCheck without any e

Re: [Bioc-devel] New Package Submission Process

ckages is > disabled. > > Please post questions/issues to bioc-devel. > > Dan > > > > - Original Message - >> From: "Valerie Obenchain" >> To: "bioc-devel" >> Sent: Tuesday, May 31, 2016 5:43:41 AM >> Subject: [Bioc-devel]

Re: [Bioc-devel] New Package Submission Process

To: "bioc-devel" > Sent: Tuesday, May 31, 2016 5:43:41 AM > Subject: [Bioc-devel] New Package Submission Process > Package developers, > > On June 6 we will transition to our new 'package tracker' on github. The > new system will enable a more public review pr

[Bioc-devel] New Package Submission Process

Package developers, On June 6 we will transition to our new 'package tracker' on github. The new system will enable a more public review process where community members (not just the assigned reviewer) can give technical and scientific input during the review. More background in this post: h

Re: [Bioc-devel] New package submission warning

Hello, I doubt that a dataset package such as GSE64985 is suitable for inclusion in Bioconductor. It creates unnecessary duplication of what can already be obtained easily with GEOquery. Have you considered using library(GEOquery) humanDataset <- getGEO("GSE64985") ? If everyone converted thei

Re: [Bioc-devel] New package submission warning

Sent: Friday, May 20, 2016 1:11:38 PM > Subject: [Bioc-devel] New package submission warning > Hi, > I'm trying to submit two packages to Bioconductor ('GSE64985' and > 'E.MTAB.62'), but am receiving this warning from BiocCheck: > > * Checking version num

[Bioc-devel] New package submission warning

Hi, I'm trying to submit two packages to Bioconductor ('GSE64985' and 'E.MTAB.62'), but am receiving this warning from BiocCheck: * Checking version number validity... * RECOMMENDED: y of x.y.z version should be even in release The version number of my packages are 0.99.x, which is required f

[Bioc-devel] New package submission process

New package developers -- We hope to start the new package submission process https://support.bioconductor.org/p/76472 as early as May 23, 2016. If you're planning to submit packages to Bioconductor after that date, please develop your package using a github repository; we'll use these as t

[Bioc-devel] New package submission

Hi BioConductor community, I have recently submitted my new R package into BioConductor tracker (issue 1455) that carries out some data pre-processing for MS/MS spectra. I seem to be having trouble with the moscato2 Windows build though. The package is fine on Linux and Mac but I get an error mes

Re: [Bioc-devel] New package submission process

014 07:46, Dan Tenenbaum <mailto:dtene...@fhcrc.org>> wrote: > > > > - Original Message - > > From: "Xiaobei Zhao" <mailto:xiao...@binf.ku.dk>> > > To: bioc-devel@r-project.org <mailto:bioc-devel@r-project.org> > &

Re: [Bioc-devel] New package submission process

- Original Message - > From: "Xiaobei Zhao" > To: bioc-devel@r-project.org > Sent: Thursday, June 26, 2014 5:20:31 AM > Subject: [Bioc-devel] New package submission process > > Hi everyone, > > I am about to submit a new package at Bioconductor. I

[Bioc-devel] New package submission process

Hi everyone, I am about to submit a new package at Bioconductor. I have followed the instructions linked below to prepare my package, http://master.bioconductor.org/developers/package-guidelines/ Early this week, I sent an initial request according to the contact information listed at http:/