Re: [Bioc-devel] Openssl is not available in netConnectHttps for importing remote BigWig files

2023-03-02 Thread Leonardo Collado Torres
Awesome, thanks to both of you for checking this! Best, Leo On Thu, Mar 2, 2023 at 2:36 PM Hervé Pagès wrote: > > and also: > >kjohnson:~ biocbuild$ curl -O > https://bioconductor.org/packages/3.16/bioc/bin/macosx/big-sur-arm64/contrib/4.2/rtracklayer_1.58.0.tgz > >kjohnson:~

Re: [Bioc-devel] Openssl is not available in netConnectHttps for importing remote BigWig files

2023-03-02 Thread Hervé Pagès
and also:   kjohnson:~ biocbuild$ curl -O https://bioconductor.org/packages/3.16/bioc/bin/macosx/big-sur-arm64/contrib/4.2/rtracklayer_1.58.0.tgz   kjohnson:~ biocbuild$ tar zxf rtracklayer_1.58.0.tgz   kjohnson:~ biocbuild$ nm rtracklayer/libs/rtracklayer.so | grep _ssl_security  

Re: [Bioc-devel] Openssl is not available in netConnectHttps for importing remote BigWig files

2023-03-02 Thread Jennifer Wokaty
Hi Leo, I discussed this with Herve who noticed that you're running rtracklayer on an M1 Mac, so he looked at https://bioconductor.org/checkResults/3.16/bioc-mac-arm64-LATEST/rtracklayer/kjohnson-buildbin.html. It's linking to the static libraries for libssl.a and libcrypto.a so that it can

[Bioc-devel] Openssl is not available in netConnectHttps for importing remote BigWig files

2023-02-23 Thread Leonardo Collado Torres
Hi Bioc-devel, recount had been failing in recent months at bioc-release and bioc-devel. I finally had the time to dive into it, and eventually that led to an error on rtracklayer that I reported at https://github.com/lawremi/rtracklayer/issues/83. Michael Lawrence noticed that my R session