Re: [Bioc-devel] R 4.0.3 for Windows R CMD check finds 'abort'

2020-10-20 Thread Mike Smith
e = TRUE) > library(devtools) > check("TestPack") > > > > -Original Message- > > From: Gordon K Smyth > > Sent: Tuesday, 20 October 2020 7:58 AM > > To: Martin Morgan ; bioc-devel@r-project.org > > Subject: RE: [Bioc-devel] R 4.0.3 for Windows

Re: [Bioc-devel] R 4.0.3 for Windows R CMD check finds 'abort'

2020-10-19 Thread Gordon K Smyth
;) > -Original Message- > From: Gordon K Smyth > Sent: Tuesday, 20 October 2020 7:58 AM > To: Martin Morgan ; bioc-devel@r-project.org > Subject: RE: [Bioc-devel] R 4.0.3 for Windows R CMD check finds 'abort' > > If you're interested, here is a small rep

Re: [Bioc-devel] R 4.0.3 for Windows R CMD check finds 'abort'

2020-10-19 Thread Gordon K Smyth
Medical Research > -Original Message- > From: Martin Morgan > Sent: Tuesday, 20 October 2020 4:41 AM > To: Gordon K Smyth ; bioc-devel@r-project.org > Subject: Re: [Bioc-devel] R 4.0.3 for Windows R CMD check finds 'abort' > > Just to respond that I don&#

Re: [Bioc-devel] R 4.0.3 for Windows R CMD check finds 'abort'

2020-10-19 Thread Vincent Carey
On Mon, Oct 19, 2020 at 1:41 PM Martin Morgan wrote: > Just to respond that I don't have a clear answer for you; I would guess > that there is a change upstream of your package, and that the NOTE is > spurious. If this also occurs on a non-Bioconductor Windows machine then it > would be appropria

Re: [Bioc-devel] R 4.0.3 for Windows R CMD check finds 'abort'

2020-10-19 Thread Martin Morgan
Just to respond that I don't have a clear answer for you; I would guess that there is a change upstream of your package, and that the NOTE is spurious. If this also occurs on a non-Bioconductor Windows machine then it would be appropriate to bring this up on another forum, R-devel or R-package-d

[Bioc-devel] R 4.0.3 for Windows R CMD check finds 'abort'

2020-10-16 Thread Gordon K Smyth
This is more an R question than a Bioconductor question, but I would be grateful if the Biocore team or other Bioc developers have any insight. After upgrading to R 4.0.3 or R 4.1.0-devel, I find that running R CMD check under Windows now gives a worrying Note about .o files and 'abort'. The sam