18 11:39:59 AM
To: bioc-devel@r-project.org; Shepherd, Lori
Subject: Re: [Bioc-devel] RareVariantVis failed
Ok, I pushed to upstream master. Where could I check that version "to be
checked" was updated to 2.7.1?
--
Tomasz
On Tue, 17 Apr 2018 17:35:18 +0200, Shepherd, Lori
<lori.sheph...@ro
April 17, 2018 11:30:17 AM
To: bioc-devel@r-project.org; Shepherd, Lori
Subject: Re: [Bioc-devel] RareVariantVis failed
Output of git remote -v seems to be ok:
Tomaszs-MacBook-Pro:RareVariantVis tomaszstokowy$ git remote -v
origin https://github.com/tstokowy/RareVariantVis.git (fetch)
origin http
> on behalf of Tomasz Stokowy
<tomasz.stok...@k2.uib.no>
Sent: Tuesday, April 17, 2018 11:20:33 AM
To: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] RareVariantVis failed
Dear Bioc-devel,
I updated my package to version 2.7.1 following instructions from Robert
(https://github.com/tst
well Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
From: Tomasz Stokowy <tomasz.stok...@k2.uib.no>
Sent: Tuesday, April 17, 2018 11:30:17 AM
To: bioc-devel@r-project.org; Shepherd, Lori
Subject: Re: [Bioc-devel] RareV
.uib.no>
Sent: Tuesday, April 17, 2018 11:20:33 AM
To: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] RareVariantVis failed
Dear Bioc-devel,
I updated my package to version 2.7.1 following instructions from Robert
(https://github.com/tstokowy/RareVariantVis).
Unfortunately, check still repo
Dear Robert,
Thank you for clarification. I updated package following your instructions
and committed changes to
https://github.com/tstokowy/RareVariantVis.
I will verify if the R CMD check goes through this time.
Kind regards,
--
Tomasz
On Tue, 03 Apr 2018 15:16:55 +0200, Robert Castelo
hi Tomasz,
regarding the warning caused by GenomicScores:
> Warning in scores(phastCons100way.UCSC.hg19, scores.only = TRUE,
> GRanges(seqnames = paste0("chr", :
>The 'scores()' method has been deprecated and will become defunct in
> the next release version of Biocondcutor 3.8. Please use
Dear bioc-devel,
My package RareVariantVis currently failed check because of examples
warnings/error. I am not able to reproduce this on my system, despite
updating R and Bioconductor.
It seems that recent changes in dependencies are causing this trouble.
Should I go for useDevel() to
